LOCUS BC064368 2600 bp mRNA linear HUM 11-APR-2007
DEFINITION Homo sapiens structural maintenance of chromosomes 1A, mRNA (cDNA
clone IMAGE:5583513), partial cds.
ACCESSION BC064368
VERSION BC064368.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2600)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2600)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 139 Row: e Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30581134.
FEATURES Location/Qualifiers
source 1..2600
/db_xref="H-InvDB:HIT000261331"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5583513"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2600
/gene="SMC1A"
/gene_synonym="CDLS2"
/gene_synonym="DXS423E"
/gene_synonym="SB1.8"
/gene_synonym="SMC1"
/gene_synonym="SMC1alpha"
/gene_synonym="SMCB"
/db_xref="GeneID:8243"
/db_xref="HGNC:HGNC:11111"
/db_xref="MIM:300040"
CDS 60..>2600
/gene="SMC1A"
/gene_synonym="CDLS2"
/gene_synonym="DXS423E"
/gene_synonym="SB1.8"
/gene_synonym="SMC1"
/gene_synonym="SMC1alpha"
/gene_synonym="SMCB"
/codon_start=1
/product="SMC1A protein"
/protein_id="AAH64368.1"
/db_xref="GeneID:8243"
/db_xref="HGNC:HGNC:11111"
/db_xref="MIM:300040"
/translation="MGFLKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDA
ISFVLGEKTSNLRVKTLRDLIHGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGS
SEYKINNKVVQLHEYSEELEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISR
SGELAQEYDKRKKEMVKAEEDTQFNYHRKKNIAAERKEAKQEKEEADRYQRLKDEVVR
AQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMRE
QQQIEKEIKEKDSELNQKRPQYIKAKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMD
ELEKEMLSVEKARQEFEERMEEESQSQGRDLTLEENQVKKYHRLKEEASKRAATLAQE
LEKFNRDQKADQDRLDLEERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLE
EQKKLEGELTEEVEMAKRRIDEINKELNQVMEQLGDARIDRQESSRQQRKAEIMESIK
RLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGE
PETFLPLDYLEVKPTDEKLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVED
ARRIAFGGHQRHKTVALDGTLFQKSGVISGGASDLKAKARRWDEKAVDKLKEKKERLT
EELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLEQTKTRHLALNLQEKSKLESE
LANFGPRINDIKRIIQSREREMKDLKEKMNQVEDEVFEEFCREIGVRNIREFEEEKVK
RQNEIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTVKKKKK"
BASE COUNT 823 a 525 c 791 g 461 t
ORIGIN
1 acctcagttc tcgggcgtac ggcgcggcct gtcctactgc cgccggcgcc gcggccgtca
61 tggggttcct gaaactgatt gagattgaga actttaagtc gtacaagggt cgacagatta
121 tcggaccatt tcagaggttc accgccatca ttggacccaa tggctctggt aagtcaaatc
181 tcatggatgc catcagcttt gtgctaggtg aaaaaaccag caacctgcgg gtaaagaccc
241 tgcgggacct gatccatgga gctcctgtgg gcaagccagc tgccaaccgg gcctttgtca
301 gcatggtcta ctctgaggag ggtgctgagg accgtacctt tgcccgtgtc attgtaggag
361 gttcttctga gtacaagatc aacaacaaag tggtccaact acatgagtac agtgaggaat
421 tagagaagtt gggcattctc atcaaagctc gtaacttcct cgttttccag ggtgctgtgg
481 aatctattgc catgaagaac cccaaagaga ggacagctct atttgaagag attagtcgtt
541 ctggggagct ggcgcaggag tatgacaagc gaaagaagga aatggtgaag gctgaagagg
601 acacacagtt taattaccat cgcaagaaaa atattgcggc tgaacgcaag gaagcaaagc
661 aggagaaaga agaggctgac cggtaccagc gcctgaagga tgaggtagta cgggctcagg
721 tacagctgca gctctttaag ctttaccata atgaagtgga aattgagaag ctcaacaagg
781 aactggcctc aaagaacaag gagatcgaga aggacaagaa gcgtatggac aaggtggagg
841 atgaactgaa ggagaagaag aaggagctgg gcaaaatgat gcgggagcag cagcagattg
901 agaaggagat caaggagaag gactcagaat tgaaccagaa gcggcctcag tacatcaaag
961 ccaaggagaa cacctcccac aaaatcaaga agctggaagc agccaagaag tctctgcaga
1021 atgctcagaa gcactacaag aagcgtaaag gtgacatgga tgagctggag aaggagatgc
1081 tgtcagtgga gaaggctcgg caggagtttg aagaacggat ggaagaagag agtcagagtc
1141 agggcagaga tttgacgttg gaggagaatc aggtgaagaa ataccaccgg ttgaaagaag
1201 aagccagcaa gagagcagct accctggccc aggagctgga gaaattcaat cgagaccaga
1261 aagctgacca ggaccgtctg gatctggaag aacggaagaa agtagagaca gaggccaaga
1321 tcaagcaaaa gctgcgggaa attgaagaga atcagaagcg gattgagaaa ctggaggaat
1381 acatcaccac tagcaagcag tccctagaag agcagaagaa gctagagggg gagctgacag
1441 aggaggtgga gatggccaag cggcgtattg atgaaatcaa taaggagctg aaccaggtga
1501 tggagcagct aggggatgcc cgcatcgacc gccaggagag cagccgccag cagcgaaagg
1561 cagagataat ggaaagcatc aagcgccttt accctggctc tgtgtacggc cgcctcattg
1621 acctatgcca gcccacacaa aagaagtatc agattgctgt aaccaaggtt ttgggcaaga
1681 acatggatgc cattattgtg gactcggaga agacaggccg ggactgtatt cagtatatca
1741 aggagcagcg tggggagcct gagaccttct tgcctcttga ctacctggag gtgaagccta
1801 cagatgagaa actccgggag ctgaaggggg ccaagctagt gattgatgtg attcgctatg
1861 agccacctca tatcaaaaag gccctgcagt atgcttgtgg caatgccctt gtctgtgaca
1921 acgtggaaga tgcccgccgc attgcctttg gaggccacca gcgccacaag acagtggcac
1981 tggatggaac cctattccag aagtcaggag tgatctctgg tggggccagt gacctgaagg
2041 ccaaggcacg gcgctgggat gagaaagcag tagacaagtt gaaagagaag aaggagcgct
2101 tgacagagga gctgaaagag cagatgaagg caaaacggaa agaggcagag ctgcgtcagg
2161 tgcagtctca ggcccatgga ctgcagatgc ggctcaagta ctcccagagt gacctagaac
2221 agaccaagac acgacatcta gccctgaatc tgcaggaaaa atccaagctg gagagtgagc
2281 tagccaactt tgggcctcgc attaatgata tcaagaggat cattcagagc cgagagaggg
2341 aaatgaaaga cttgaaggag aagatgaacc aggtagagga tgaggtgttt gaagagtttt
2401 gtcgggagat tggtgtgcgc aacatccggg agtttgagga agaaaaggtg aaacggcaga
2461 atgaaatcgc caagaagcgt ttggagtttg agaatcagaa gactcgcttg ggcattcagt
2521 tggattttga aaagaaccaa ctgaaggagg accaagataa agtacacatg tgggagcaga
2581 cagtgaaaaa aaaaaaaaaa
//