LOCUS BC064348 4151 bp mRNA linear HUM 16-FEB-2007
DEFINITION Homo sapiens chromosome 13 open reading frame 23, mRNA (cDNA clone
MGC:70400 IMAGE:4939198), complete cds.
ACCESSION BC064348
VERSION BC064348.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4151)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4151)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 134 Row: o Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25777603.
FEATURES Location/Qualifiers
source 1..4151
/db_xref="H-InvDB:HIT000261311"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70400 IMAGE:4939198"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4151
/gene="C13orf23"
/gene_synonym="bA50D16.2"
/gene_synonym="RP11-50D16.2"
/db_xref="GeneID:80209"
/db_xref="HGNC:HGNC:20291"
CDS 90..2924
/gene="C13orf23"
/gene_synonym="bA50D16.2"
/gene_synonym="RP11-50D16.2"
/codon_start=1
/product="chromosome 13 open reading frame 23"
/protein_id="AAH64348.1"
/db_xref="GeneID:80209"
/db_xref="HGNC:HGNC:20291"
/translation="MDKKSFEMVLDEIRKAVLTEYKLKAIEYVHGYFSSEQVVDLLRY
FSWAEPQLKAMKALQHKMVAVQPTEVVNILNCFTFSKDKLVALELLASNIIDAQNSRP
IEDLFRVNMSEKKRCKRILEQAFKGGCKAPHAMISSCGTIPGNPYPKGRPSRINGIFP
GTPLKKDGEECTNEGKGIAARILGPSKPPPSTYNPHKPVPYPIPPCRPHATIAPSAYN
NAGLVPLANVIAPPPPPYTPNPVGTENEDLSNPSKPIQNQTFSTPASQLFSPHGSNPS
TPAATPVPTASPVKAINHPSASAAATVSGMNLLNTVLPVFPGQVSSAVHTPQPSIPNP
TVIRTPSLPTAPVTSIHSTTTTPVPSIFSGLVSLPGPSATPTAATPTPGPTPRSTLGS
SEAFASTSAPFTSLPFSTSSSAASTSNPNSASLSSVFAGLPLPLPPTSQGLSNPTPVI
AGGSTPSVAGPLGVNSPLLSALKGFLTSNDTNLINSSALSSAVTSGLASLSSLTLQNS
DSSASAPNKCYAPSAIPTPQRTSTPGLALFPGLPSPVANSTSTPLTLPVQSPLATAAS
ASTSVPVSCGSSASLLRGPHPGTSDLHISSTPAATTLPVMIKTEPTSPTPSAFKGPSH
SGNPSHGTLGLSGTLGRAYTSTSVPISLSACLNPALSGLSSLSTPLNGSNPLSSISLP
PHGSSTPIAPVFTALPSFTSLTNNFPLTGNPSLNPSVSLPGSLIATSSTAATSTSLPH
PSSTAAVLSGLSASAPVSAAPFPLNLSTAVPSLFSVTQGPLSSSNPSYPGFSVSNTPS
VTPALPSFPGLQAPSTVAAVTPLPVAATAPSPAPVLPGFASAFSSNFNSALVAQAGLS
SGLQAAGSSVFPGLLSLPGIPGFPQNPSQSSLQELQHNAAAQSALLQQVHSASALESY
PAQPDGFPSYPSAPGTPFSLQPSLSQSGWQ"
BASE COUNT 1089 a 1089 c 750 g 1223 t
ORIGIN
1 tattttttac tatcggcgga gcagaccagg gatgaacgtc ttttaattgc aagtataact
61 gttaaaacca cgtcgggata gtagtcaaga tggataaaaa gtcctttgaa atggtgctgg
121 atgaaattag aaaggctgtt ttgacagaat acaaattaaa agcaattgaa tatgtgcatg
181 gatacttttc tagtgaacag gtggttgatt tgctgagata tttttcctgg gccgagcccc
241 agttgaaggc aatgaaagca ttacagcata aaatggtggc tgtccagcca acagaagtgg
301 tcaatatact caactgtttc actttcagta aagacaaact agttgctctt gaactgttag
361 cctcgaacat tattgatgca cagaattctc gtcctattga agatttattc agggtaaata
421 tgtctgagaa gaaacggtgc aagagaatac ttgaacaggc tttcaagggg ggctgcaaag
481 ctcctcatgc tatgatatct tcttgtggaa caatcccagg aaatccatat cccaaaggaa
541 gacctagccg cataaatgga attttcccag gaactccttt gaaaaaagat ggtgaagaat
601 gtactaacga aggcaaagga atagctgcac gaattcttgg gccatccaaa ccacctcctt
661 caacatataa tccacataaa cctgttcctt atccgatacc tccatgccga ccacatgcaa
721 ctattgcacc aagtgcttat aacaatgcag gtctggtacc attagcgaat gtcatagctc
781 cacctccacc tccatatact cctaatcctg taggaacaga gaatgaagac ctttcgaatc
841 cgtcaaaacc tatacagaat caaacatttt ccaccccagc aagtcaactc ttttctcctc
901 atggttctaa tccttcaaca cctgctgcaa ctcctgttcc tactgcatcc ccagtcaagg
961 caattaatca tccatcagca tcagcagctg ccaccgtttc tggaatgaac ctgctgaata
1021 ctgtccttcc tgtgttccca gggcaggtct cctcagccgt tcacacacct cagccatcaa
1081 taccaaaccc aacagttatc agaacccctt cattgcccac tgcacctgtt acatccatcc
1141 acagtacaac caccactcct gttccttcca ttttttctgg cctagtgtca ctgccaggtc
1201 cttctgccac tcctaccgca gccactccta ccccaggacc tacaccacgg tccactcttg
1261 gttccagtga agcatttgct tctacttctg cacctttcac tagcctcccc ttttccacca
1321 gctcttctgc tgcttctacc agcaacccaa attctgcttc attgtcatca gtttttgcag
1381 ggctcccttt gcccttacca ccaacatccc aaggcctatc caacccgact cctgtaattg
1441 ctggtggctc tactcccagc gttgccggtc cacttggtgt gaacagtcct cttttgtctg
1501 cgttaaaagg ttttctgaca tccaatgaca ccaatttaat caactcctct gctttatcct
1561 ctgctgtcac aagtgggctg gcttcactat cttctcttac tcttcagaac tctgactctt
1621 ctgcttcagc ccctaacaag tgctatgccc catcagccat ccctacccca cagaggactt
1681 ccactccagg gttggccctg ttcccaggcc tgccgtctcc cgtggctaac tcaacttcca
1741 ctcccctgac attgcctgta cagtctcctt tagccactgc tgcatcagct tccacgtcag
1801 tgccagttag ctgtggctcc tcagcctccc ttttgcgtgg cccccaccca ggtacctcag
1861 atctgcatat ttcatctacc cctgctgcaa caactcttcc tgttatgatc aaaactgagc
1921 ccacaagtcc tactccctcg gccttcaaag gtccatctca ttctgggaat ccctctcatg
1981 gcactttagg tttgtcaggg acattgggcc gtgcatatac ttcaacatcc gtgcccatca
2041 gtttatctgc ttgccttaat cctgcattgt caggtctctc cagcttgagt actcctttaa
2101 atggttcaaa tcctctttcc tctatttccc ttccaccaca tggttcctcc actcccattg
2161 caccagtatt cactgctctt ccttctttta cttctttgac caacaatttt cctttaactg
2221 gcaacccatc tcttaatccg tcagtatctc tcccagggtc attaatagcc acctcatcta
2281 ccgctgccac ctccacatct ctccctcatc ctagctcaac ggcagctgtt ctctcagggc
2341 tttctgcttc agcaccagtc tcagcagcac ctttccccct caacctgtcc actgctgttc
2401 cctcactttt ctctgttact caaggacctc tgtcatcttc aaatccctcc tatccaggct
2461 tttctgtctc taatacccca agcgttaccc ctgctcttcc ctcattcccg gggctgcagg
2521 cgccctctac agtcgcagct gtcacaccac tacctgtggc tgccacagcc ccatccccag
2581 ctccagtcct cccaggattc gcctcagcat tcagttccaa tttcaactcc gctcttgttg
2641 cacaagccgg tttatcatct ggacttcaag ctgcaggcag ttctgttttt ccaggccttt
2701 tgtccctccc gggtatccct gggtttcctc agaatccttc acaatcatcc ttgcaagaat
2761 tacagcataa tgcggctgcg cagtcagcat tgttacagca ggtccattca gcttcggctc
2821 tggaaagcta tccagctcag cctgatgggt ttcctagtta tccttcagcg ccaggaacac
2881 cattttcttt gcaaccaagc ctgtcccaga gtgggtggca gtgaatactt ttaactttta
2941 ttctccttca gagcaacatc agaattgcct gagaactgca atgaacaatc tgacaaatgt
3001 gaagctggcc aaaagtcgga aaatgagaat gagggtaatc ctggagaaat tgtgacaaca
3061 atttgaaaat tgtggttgca ttttaaagtg tgaacactcc cctatgtaaa tatgctgaca
3121 ataaattgta tggagaatgg tatttaaaaa gtgtttggag acttttcacc tgtcctataa
3181 aattttgaat tgtgtatgtg atctacatag aaagaatatt aaagagtagg ttgaactctt
3241 tatagccgaa tacagcctta aatatgcttg tatagcatcc actggcagaa gtaatagttg
3301 tgcctcagac ttgggggttg catgtggccc tgggggagtt actacccttg gtatgcatga
3361 gcggttccta ttagcatcag tgggaactca gtactctgta tgtatccaca aaagggaact
3421 tgagacccac agttattctt aatttctgat attaacaacc gtacatactg ctgaatttaa
3481 ctcaaaatat ttcaggtaag tgaaagtggt gcttaatgta gactatagaa tgactttcag
3541 gtgttttcaa ctgaaagtat atatccagaa ctgcatcctt atagaaatac aagtaagact
3601 taggataatt tgccttcaaa acagttttcc taatctcagc agtatccagt gagtgaagaa
3661 cacttgactg actcttgggc cacctctgtt acttactgta ctatggaagc tcctggtgaa
3721 tgtttacaat tatgggatgt agtatttcta tttgtacttt aagtcaaatg cttatatgaa
3781 atatgtgaca acaaatagag aagactggct ctgttagtaa ttatgcagta tgtactctat
3841 ttaaggatct gtggtagtat aacatgagtg aatgtcatta attttgaagt aataactgcc
3901 acatgtggga agtaggggag taaggagaat gaattccaat ctgtgattaa aagtgtaaac
3961 tatagactct actgtagtac atttcaggat ctagaagttt tacttttata aagatggtgt
4021 ccggaagatg ttgctaatgt attttacttc aacataggga acaaactttt taagtatatt
4081 aataaacctg tatggttagt ttttaacagt tttttaaaat aaactatgga tatgacaaaa
4141 aaaaaaaaaa a
//