LOCUS BC064134 1318 bp mRNA linear HUM 02-JAN-2004
DEFINITION Homo sapiens peptidylprolyl isomerase (cyclophilin)-like 4, mRNA
(cDNA clone IMAGE:6526478), partial cds.
ACCESSION BC064134
VERSION BC064134.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1318)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1318)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: k Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22538483.
FEATURES Location/Qualifiers
source 1..1318
/db_xref="H-InvDB:HIT000261276"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6526478"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>1318
/gene="PPIL4"
/gene_synonym="HDCME13P"
/db_xref="GeneID:85313"
/db_xref="MIM:607609"
CDS 16..>1318
/gene="PPIL4"
/gene_synonym="HDCME13P"
/codon_start=1
/product="PPIL4 protein"
/protein_id="AAH64134.1"
/db_xref="GeneID:85313"
/db_xref="MIM:607609"
/translation="MAVLLETTLGDVVIDLYTEERPRACLNFLKLCKIKYYNYCLIHN
VQRDFIIQTGDPTGTGRGGESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSD
QHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIIKKINETFVDKDFVPYQDIRINHTV
ILDDPFDDPPDLLIPDRSPEPTREQLDSGRIGADEEIDDFKGRSAEEVEEIKAEKEAK
TQAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWK
TGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQSVAKVKWKGKGGKYTKS
DFKEYEKEQDKPPNLVLKDKVKPKQDTKYDLILDEQAEDSKSSHSHTSKKHKKKTHHC
SEEKEDEDYMPIKNTNQDIYREMGFGHYEEEESCWEKQKKKK"
misc_feature 40..483
/gene="PPIL4"
/gene_synonym="HDCME13P"
/note="pro_isomerase; Region: Cyclophilin type
peptidyl-prolyl cis-trans isomerase"
/db_xref="CDD:pfam00160"
misc_feature 736..957
/gene="PPIL4"
/gene_synonym="HDCME13P"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
BASE COUNT 482 a 211 c 310 g 315 t
ORIGIN
1 ggaggagcgg gcgccatggc ggttctactg gagaccactt taggcgacgt cgtcatcgac
61 ttgtacaccg aagaacggcc gcgtgcctgc ttgaatttct tgaaactgtg caaaataaaa
121 tattacaatt attgccttat tcacaatgta cagagggatt ttatcataca aactggcgat
181 cctacaggga ctggccgtgg aggagagtct atctttggcc aactgtatgg tgatcaagca
241 agcttttttg aggcagaaaa agtcccaaga attaagcaca agaagaaagg cacagtgtcc
301 atggtgaata atggcagtga tcaacatgga tctcagtttc ttatcaccac aggagaaaat
361 ctagattatc ttgatggtgt ccatacggtg tttggtgagg tgacagaagg catggacata
421 attaagaaaa ttaatgagac ctttgttgac aaggactttg taccatatca ggatatcagg
481 ataaatcata cggtgatttt agatgatcca tttgatgacc ctcctgattt attaatccct
541 gatcgatcac cagaacctac aagggaacaa ttagatagtg gtcgaatagg agcagatgaa
601 gaaattgatg atttcaaagg aagatcagct gaggaagtag aagaaataaa ggcagaaaaa
661 gaggctaaaa ctcaggctat acttttggag atggtgggag acctacctga tgcagatatt
721 aaacctccag aaaatgtact gtttgtgtgt aaattgaacc cagtgaccac agatgaggat
781 ctggaaataa tattctctag atttgggcca ataagaagtt gtgaagttat ccgagactgg
841 aagacaggag agtccctctg ttacgctttt attgaatttg aaaaggaaga agattgtgag
901 aaagcattct tcaaaatgga caatgtgctt atagatgaca gaagaataca tgtggatttt
961 agccagtcgg ttgcaaaggt taaatggaaa ggaaaaggtg ggaaatacac caagagtgat
1021 ttcaaggagt atgaaaaaga acaggataaa ccacctaatt tggttctgaa agataaagta
1081 aagcccaaac aggatacaaa atacgatctt atattagatg agcaggccga agactcaaaa
1141 tcaagtcact cacacacaag taaaaaacac aagaagaaaa cccatcactg ttctgaagag
1201 aaagaagatg aggactacat gccaatcaaa aatactaatc aggatatcta tagagaaatg
1261 gggtttggtc actatgaaga agaagaaagc tgttgggaga aacaaaaaaa aaaaaaaa
//