LOCUS BC063864 3011 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens F-box protein 42, mRNA (cDNA clone MGC:75362
IMAGE:6182628), complete cds.
ACCESSION BC063864
VERSION BC063864.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3011)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3011)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: c Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..3011
/db_xref="H-InvDB:HIT000261240"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:75362 IMAGE:6182628"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3011
/gene="FBXO42"
/gene_synonym="Fbx42"
/gene_synonym="KIAA1332"
/db_xref="GeneID:54455"
/db_xref="HGNC:HGNC:29249"
/db_xref="MIM:609109"
CDS 217..2370
/gene="FBXO42"
/gene_synonym="Fbx42"
/gene_synonym="KIAA1332"
/codon_start=1
/product="F-box protein 42"
/protein_id="AAH63864.1"
/db_xref="GeneID:54455"
/db_xref="HGNC:HGNC:29249"
/db_xref="MIM:609109"
/translation="MASSSDSEDDSFMAVDQEETVLEGTMDQDEEPHPVLEAEETRHN
RSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNI
QWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKE
WIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKN
WWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNIS
GPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGPWAWQPLKVENEEH
GAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQ
SPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNGGSLSPGTAA
VGGSSLDSPVQAISPSTPSAPEGYDLKIGLSLAPRRGSLPDQKDLRLGSIDLNWDLKP
ASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLEAIKAM
SSKGPSASAALSPPLGSSPGSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIARRLGHH
PPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFNSSSVVGPPETSLHTVV
QGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR"
BASE COUNT 772 a 762 c 764 g 713 t
ORIGIN
1 gcagcagctg cggcggcggc ggcgtttgag tggaggaaga tggcggctcc gggcggctcg
61 gggtcccgcc agctgtgagg agccccgagc acggctgtcg cggcctgagg cagagcgcct
121 ctgctctggc cctgtccctg gctccctcat taccgtcgcc agcggagcga acccgagagc
181 gtggagcggg ctgggccagc tgttgagtgg aatgtcatgg ccagctcctc agacagtgaa
241 gatgacagtt tcatggctgt ggaccaggaa gaaactgtgc tggaagggac aatggatcaa
301 gatgaggagc cccacccagt attggaggct gaggagacta gacataatag gtccatgtcg
361 gagctgccag aagaggtttt ggagtatatc ctgtcctttc tctcaccgta tcaggaacac
421 aaaactgcgg cccttgtctg caaacagtgg tatcgactta tcaaaggtgt agcccatcag
481 tgttatcatg gtttcatgaa ggctgtccag gaaggaaaca ttcagtggga gagccgtacc
541 tatccttatc ctggaacccc aatcactcag cgcttctcgc acagtgcatg ctattatgat
601 gctaatcagt ctatgtatgt gtttggaggc tgtacccaga gcagctgcaa tgctgctttc
661 aatgacctct ggagacttga cctaaacagc aaagagtgga tccgaccttt ggcttcaggg
721 tcctatcctt cccccaaagc tggagcaact ctggtcgtgt acaaggactt gctagtgctg
781 tttggtggct ggacgcggcc aagcccttat cccctacacc agccagagag attctttgat
841 gaaatacaca cttactcacc ctctaaaaat tggtggaact gcattgtgac aacccatggg
901 ccacctccca tggctggcca ctcctcctgt gtgatagatg ataaaatgat tgtctttggt
961 ggctctttag gatcccggca aatgagcaat gatgtctggg tccttgacct tgagcagtgg
1021 gcgtggtcca agccgaacat ctctggcccc agtcctcatc ctcgaggtgg ccaatctcag
1081 attgtcatag atgatgcaac tatcttaatc ctcggagggt gtggcggtcc caatgctcta
1141 ttcaaggatg cttggttgtt gcacatgcat tctggtcctt gggcctggca gccactcaag
1201 gtagaaaatg aagagcatgg ggccccagaa ctgtggtgcc atccagcttg ccgggtggga
1261 cagtgtgtgg tggtcttcag ccaggctcct agtgggagag ccccactcag ccccagtttg
1321 aactctcgcc catcacctat cagtgccact cctccagctc tcgttcctga aacccgagag
1381 taccgctctc agtctccagt aagaagcatg gatgaagctc cttgtgttaa cggccgctgg
1441 ggaacactga gacccagggc tcaaaggcag actccttcag gttcccggga agggagcctt
1501 tccccagcca gaggagacgg ctctcctatc ctcaatggtg ggagtttgtc tccaggaacg
1561 gcagctgtgg gtggctcttc tttggacagt cctgtacagg ccatatctcc aagtactcca
1621 tctgctcctg aaggatacga cctgaaaata ggactttctt tggccccccg acgaggatca
1681 ctaccagatc agaaagatct gagattagga tccatagatc tgaattggga tctgaaaccc
1741 gcttccagta gtaatcccat ggatggcatg gacaatagga cagttggggg aagtatgaga
1801 caccctcctg aacagacaaa tggtgtgcat accccacctc acgtggccag tgcccttgca
1861 ggggccgtct ccccaggtgc cctgcgtcgg agtctggaag ccatcaaagc gatgtcctcc
1921 aaaggcccct cggcctctgc agcactaagt cctcctcttg ggtcttctcc aggctctcct
1981 gggagccaga gtttgagcag tggagaaaca gtgcccatcc ctcgcccagg gcctgcccaa
2041 ggagatggac attccttacc tcccattgct cgccgcctgg gccaccaccc tccacagtcc
2101 ctaaatgttg gcaaacccct ataccagagt atgaactgca agcccatgca gatgtacgtg
2161 ctggacatta aagacaccaa ggagaagggg cgggtcaaat ggaaagtatt taatagcagt
2221 tctgtggttg gacctcctga aaccagcctg cataccgtgg tacaaggcag gggtgaactc
2281 atcatatttg gaggactcat ggacaagaaa cagaatgtga agtactatcc aaaaacaaac
2341 gccttgtact ttgtacgagc aaagagataa tgtgttctaa acccctttcc ttttctgtgg
2401 cttttaattt ggaattttcc agtgtgtaag catttggact gagaattggg aaaacaaaat
2461 tactcccaga agccaaaact ctttaattcc caaccgaagt cactccaggc tgggatcaaa
2521 tctccattaa gaaaaaaaat tatatataaa tatatatata tatattatat agccaactct
2581 gttgacaaaa aaagggagag atttccatcc tggttcagat aaagttgttg ctgtgtttta
2641 acaggggctg ggctgccttt ttctaccttg ctggtaacta gaccaagaag ttagagaata
2701 gactaacatc agtaacttcc caaaagaaac tgaagagccc cctgtaaatc tttatgtggc
2761 cttcttggag ttaaaaaatg aaagggcata tgtaagttgc aaaggtggag ggttttagac
2821 tctcatgctt caggtgctgt cggggtaaaa gtaactgttt ttccccttct cttaaaacca
2881 cagaggacct gtgacagctc tgcagaaatg ccagtgcctg gccccctctt gccttttatg
2941 gctgaggaaa gttacccaac aaaggatttt attccaaaaa aaaaaaaaaa aaaaaaaaaa
3001 aaaaaaaaaa a
//