LOCUS BC063857 2225 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens glycosylphosphatidylinositol anchored high density
lipoprotein binding protein 1, mRNA (cDNA clone MGC:75199
IMAGE:6183386), complete cds.
ACCESSION BC063857
VERSION BC063857.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2225)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2225)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: c Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31342336.
FEATURES Location/Qualifiers
source 1..2225
/db_xref="H-InvDB:HIT000261233"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:75199 IMAGE:6183386"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2225
/gene="GPIHBP1"
/gene_synonym="GPI-HBP1"
/db_xref="GeneID:338328"
/db_xref="HGNC:HGNC:24945"
CDS 4..558
/gene="GPIHBP1"
/gene_synonym="GPI-HBP1"
/codon_start=1
/product="glycosylphosphatidylinositol anchored high
density lipoprotein binding protein 1"
/protein_id="AAH63857.1"
/db_xref="GeneID:338328"
/db_xref="HGNC:HGNC:24945"
/translation="MKALGAVLLALLLFGRPGRGQTQQEEEEEDEDHGPDDYDEEDED
EVEEEETNRLPGGRSRVLLRCYTCKSLPRDERCNLTQNCSHGQTCTTLIAHGNTESGL
LTTHSTWCTDSCQPITKTVEGTQVTMTCCQSSLCNVPPWQSSRVQDPTGKGAGGPRGS
SETVGAALLLNLLAGLGAMGARRP"
BASE COUNT 453 a 658 c 721 g 393 t
ORIGIN
1 gagatgaagg cgctcggggc tgtcctgctt gccctcttgc tgttcgggcg gccagggaga
61 gggcagacac agcaggagga agaggaagag gacgaggacc acgggccaga tgactacgac
121 gaggaagatg aggatgaggt ggaagaggag gagaccaaca ggctccctgg tggcaggagc
181 agagtgctgc tgcggtgcta cacctgcaag tccctgccca gggacgagcg ctgcaacctg
241 acgcagaact gctcacatgg ccagacctgc acaaccctca ttgcccacgg gaacaccgag
301 tcaggcctcc tgaccaccca ctccacgtgg tgcacagaca gctgccagcc catcaccaag
361 acggtggagg ggacccaggt gaccatgacc tgctgccagt ccagcctgtg caatgtccca
421 ccctggcaaa gctcccgagt ccaggaccca acaggcaagg gggcaggcgg cccccggggc
481 agctccgaaa ctgtgggcgc agccctcctg ctcaacctcc ttgccggcct tggagcaatg
541 ggggccagga gaccctgacc cacggcccct ccccaccccc acccggctca cccccggccc
601 tgccagcact ctgtctggta ccttcccctc ctgcccctgc accagctttg gagaatggat
661 ttggagtgtc ttgggcgatc cagccagcgc aggccccccg gcccggttgc ttcctcagtt
721 cccggctgtg tccttggtgt cctttctcca ccacctgtga gcagcaagac tgccgcacgt
781 gggcgctggg tccagacctc ggctgccacg ccccaggacc tgcagccctc atgggggctg
841 gggatcccca tcagcacagc caggcagaga tgatacccac cacacacctg ggggccccca
901 cacccagtcc tcacccttaa cttctgccat gggaattcct ccatctgcag cggtcacacg
961 ggcccaccct gcccttcccc aggtcggcct ctccgctgtc tggagggaag gggatttgga
1021 gggaggctgt cgtcgccccc aggaaagacg ggcctggggg aggcgggaca gtgggagagg
1081 cgcgctgagg atgagagggc acagggaggt gggttggggt gaggccacat gcggaggggc
1141 ggggcggggg ggggctgggg ggacaggcac caagtatgaa gaggatgggg ccagcggggc
1201 ctgtctggct atggcgtgag caccgctatg ggagaccctg gcttggaaag tgaacttgca
1261 gccttggatg gggaagggcc agatgctggg tgggtgcctg tcaccttgag gtgaccatct
1321 agggtcagta cctgctgggc ttaggacagc gcctgaggct gggaatacct gtctctgctc
1381 tagcagaggc taaagcaggc tagagcagtg gaggggtgga gttgatgaaa ggagaggagt
1441 agatgagatg gaatttttcc agcctcatcc tggcctgccc tctagactcc agtccccaag
1501 ccctcagcct agtgggtgtc atggatggat ctgggggtgt cagacaggct accctgtgcc
1561 agggaggggg cagaatgggc ctgcagcttc ctgcagagga agcaggactg ggtagcagag
1621 ccgggaaggt gggtggccca ttacaggggg gtccccaggg tgtcctctgg cagggctgtg
1681 actgctgcaa gctctgcctt caccagtagc tggtgccagg acagagctct gggacagcag
1741 gcagaggccg agcctgggcc acagctcagc cactgacttg ggtatcagtt tccccttctg
1801 agaagtacag agtgagactt aaagaacccc tagatcccca ccagttcaac actccattaa
1861 ctgggaagcc cagagtcctg tccggcctgc caagttcatc ctggtggaca gcgggaggcc
1921 tccgctaact gttctcttct tttccttatt aataaaacac acaatgccta gctggggggt
1981 cggaaggcaa atgccctaga tggtggggtc acgtctttct ccttctcctt cctccttctg
2041 ctggctgaag tgatgactgg agctcagcaa ccactttgca ccatgaggca gcactgagca
2101 cggtagggca gcctggtgag aggggcctag ctcgctgccg acagaagtca ctgcctacct
2161 cagggtcccc ttacctgggt gggaaataaa tttctgctgt gttgaagcta aaaaaaaaaa
2221 aaaaa
//