LOCUS BC063838 2511 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens melanoma antigen family D, 4B, mRNA (cDNA clone
MGC:74882 IMAGE:6185437), complete cds.
ACCESSION BC063838
VERSION BC063838.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2511)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2511)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: d Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29337291.
FEATURES Location/Qualifiers
source 1..2511
/db_xref="H-InvDB:HIT000261214_04"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:74882 IMAGE:6185437"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2511
/gene="MAGED4B"
/db_xref="GeneID:81557"
/db_xref="HGNC:HGNC:22880"
/db_xref="MIM:300765"
CDS 57..2282
/gene="MAGED4B"
/codon_start=1
/product="melanoma antigen family D, 4B"
/protein_id="AAH63838.1"
/db_xref="GeneID:81557"
/db_xref="HGNC:HGNC:22880"
/db_xref="MIM:300765"
/translation="MAEGSFSVQSESYSVEDMDEGSDEVGEEEMVEGNDYEEFGAFGG
YGTLTSFDIHILRAFGSLGPGLRILSNEPWELENPVLAQTLVEALQLDPETLANETAA
RAANVARAAASNRAARAAAAAARTAFSQVVASHRVATPQVSGEDTQPTTYAAEAQGPT
PEPPLASPQTSQMLVTSKMAAPEAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAR
EVDANRPSTAFLGQNDVFDFTQPAGVSGMAFPRPKRPAPAQEAATEGPSAASGVPQTG
PGREVAATRPKTTKSGKALAKTRWVEPQNVVAAAAAKAKMATSIPEPEGAAAATAQHS
AEPWARMGGKRTKKSKHLDDEYESSEEERETPAVPPTWRASQPSLTVRAQLAPRPPMA
PRSQIPSRHVLCLPPRNVTLLQERANKLVKYLMIKDYKKIPIKRADMLKDVIREYDEH
FPEIIERATYTLEKKFGIHLKEIDKEEHLYILVCTRDSSARLLGKTKDTPRLSLLLVI
LGVIFMNGNRASEAVLWEALRKMGLRPGVRHPFLGDLRKLITDDFVKQKYLEYKKIPN
SNPPEYEFLWGLRARHETSKMRVLRFIAQNQNRDPREWKAHFLEAVDDAFKTMDVDMA
EEHARAQMRAQMNIGDEALIGRWSWDDIQVELLTWDEDGDFGDAWARIPFAFWARYHQ
YILNSNRANRRATWRAGVSSGTNGGASTSVLDGPSTSSTIRTRNAARAGASFFSWIQH
R"
BASE COUNT 581 a 733 c 730 g 467 t
ORIGIN
1 ggacgccatt ggagttcccg agaaggctga gctctcatct ccctgggacc cgcagcatgg
61 ctgagggaag cttcagcgtg caatcggaaa gctacagtgt tgaagacatg gatgagggta
121 gcgacgaagt cggggaggaa gagatggttg aaggcaacga ctatgaagaa ttcggtgcgt
181 ttggtggcta tggcaccctc accagctttg acatccatat cctcagagcc ttcggaagct
241 tgggtccagg ccttcgcatc ttatcgaatg agccctggga actggaaaac cctgtgctgg
301 cccagaccct ggtggaggca ttgcagctgg atccggaaac acttgccaat gagacggccg
361 cccgtgctgc caacgtagcc cgcgccgccg cctccaaccg tgcggctcgg gccgctgccg
421 ccgctgcccg taccgccttc agtcaggtgg tcgctagcca ccgggtggcc acgccgcagg
481 tctcaggaga ggatacccag cccacgacct acgccgccga ggctcagggg cccacccctg
541 agccacccct tgcttctccg cagacctccc agatgttagt caccagtaag atggctgccc
601 ccgaggctcc ggcaacctcc gcacagtccc agacaggctc cccggcccag gaggctgcta
661 ctgagggccc tagtagcgcc tgtgctttct ctcaggctcc gtgtgccagg gaggtggacg
721 ccaaccggcc cagcacagcc ttcctgggcc agaatgatgt cttcgatttc actcagccgg
781 caggtgtcag tggcatggcc ttcccgcgcc ccaagagacc tgccccagcc caagaggctg
841 ccacagaggg ccccagtgct gcctctggtg tgccccagac gggacctggc agggaggtgg
901 cagccacccg gcccaagacc accaagtcgg ggaaggcgct ggccaagact cggtgggtgg
961 agcctcagaa tgttgtggca gcagctgctg ccaaggccaa gatggccacg agcatccctg
1021 agccggaggg tgcagctgct gccactgctc agcacagtgc tgagccctgg gccaggatgg
1081 gaggcaagag gaccaagaag tccaagcacc tggatgatga gtatgagagc agcgaggagg
1141 agagagagac tcccgcggtc ccacccacct ggagagcatc acagccctca ttgacggtgc
1201 gggctcagtt ggcccctcgg cccccgatgg ccccgaggtc ccagataccc tcaaggcacg
1261 tactgtgcct gcccccccgc aacgtgaccc ttctgcagga gagggcaaat aagttggtga
1321 aatacctgat gattaaggac tacaagaaga tccccatcaa gcgcgcagac atgctgaagg
1381 atgtcatcag agaatatgat gaacatttcc ctgagatcat tgaacgagca acgtacaccc
1441 tggaaaagaa gtttgggatc cacctgaagg agatcgacaa ggaagaacac ctgtatattc
1501 ttgtctgcac acgggactcc tcagctcgcc tccttggaaa aaccaaggac actcccaggc
1561 tgagtctcct cttggtgatt ctgggcgtca tcttcatgaa tggcaaccgt gccagcgagg
1621 ctgtcctctg ggaggcacta cgcaagatgg gactgcgccc tggggtgagg cacccattcc
1681 tcggcgatct gaggaagctc atcacagatg actttgtgaa gcagaagtac ctggaataca
1741 agaagatccc caacagcaac ccacctgagt atgaattcct ctggggcctg cgagcccgcc
1801 atgagaccag caagatgagg gtcctgagat tcatcgccca gaatcagaac cgagaccccc
1861 gggaatggaa ggctcatttc ttggaggctg tggatgatgc tttcaagaca atggatgtgg
1921 atatggccga ggaacatgcc agggcccaga tgagggccca gatgaatatc ggggatgaag
1981 cgctgattgg acggtggagc tgggatgaca tacaagtcga gctcctgacc tgggatgagg
2041 acggagattt tggcgatgcc tgggccagga tcccctttgc tttctgggcc agataccatc
2101 agtacattct gaatagcaac cgtgccaaca ggagggccac gtggagagct ggcgtcagca
2161 gtggcaccaa tggaggggcc agcaccagcg tcctagatgg ccccagcacc agctccacca
2221 tccggaccag aaatgctgcc agagctggcg ccagcttctt ctcctggatc cagcaccgtt
2281 gacgaactgc agcgatctta ctggccaagc cagagcgcct cctctcagat tccttctcga
2341 cacagcaccc taggcggctt cttcctgtca gtcggaggtg gcatgcaaga tgaagctctc
2401 tttgctcttc ctgctttcat tttgtgcttt tccttgtgtt ttcatgtttt gggtatcagt
2461 gttacattaa agttgcaaaa ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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