LOCUS BC063827 5534 bp mRNA linear HUM 18-AUG-2006
DEFINITION Homo sapiens retinoid X receptor, alpha, mRNA (cDNA clone
IMAGE:6528306), partial cds.
ACCESSION BC063827
VERSION BC063827.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5534)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5534)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: l Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21536318.
FEATURES Location/Qualifiers
source 1..5534
/db_xref="H-InvDB:HIT000261204"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6528306"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..5534
/gene="RXRA"
/gene_synonym="NR2B1"
/db_xref="GeneID:6256"
/db_xref="HGNC:HGNC:10477"
/db_xref="MIM:180245"
CDS <1..1551
/gene="RXRA"
/gene_synonym="NR2B1"
/codon_start=1
/product="RXRA protein"
/protein_id="AAH63827.1"
/db_xref="GeneID:6256"
/db_xref="HGNC:HGNC:10477"
/db_xref="MIM:180245"
/translation="ATFATTRRAAASARRRRHRSRRLPAARARAGRAGGRRARRPLPA
PPAGHELVADMDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLH
SPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSED
IKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVR
KDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVES
TSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLV
EWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAH
SAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKV
YASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM
LEAPHQMT"
BASE COUNT 1011 a 1693 c 1675 g 1155 t
ORIGIN
1 gcgacttttg caacaactcg ccgcgccgcg gcctccgcgc gccgccgccg ccaccgcagc
61 cgccggctcc ccgccgcccg ggcccgggcc ggccgcgccg ggggccgccg cgcccgccgc
121 ccgctgcctg cgccgccggc cgggcatgag ttagtcgcag acatggacac caaacatttc
181 ctgccgctcg atttctccac ccaggtgaac tcctccctca cctccccgac ggggcgaggc
241 tccatggctg ccccctcgct gcacccgtcc ctggggcctg gcatcggctc cccgggacag
301 ctgcattctc ccatcagcac cctgagctcc cccatcaacg gcatgggccc gcctttctcg
361 gtcatcagct cccccatggg cccccactcc atgtcggtgc ccaccacacc caccctgggc
421 ttcagcactg gcagccccca gctcagctca cctatgaacc ccgtcagcag cagcgaggac
481 atcaagcccc ccctgggcct caatggcgtc ctcaaggtcc ccgcccaccc ctcaggaaac
541 atggcttcct tcaccaagca catctgcgcc atctgcgggg accgctcctc aggcaagcac
601 tatggagtgt acagctgcga ggggtgcaag ggcttcttca agcggacggt gcgcaaggac
661 ctgacctaca cctgccgcga caacaaggac tgcctgattg acaagcggca gcggaaccgg
721 tgccagtact gccgctacca gaagtgcctg gccatgggca tgaagcggga agccgtgcag
781 gaggagcggc agcgtggcaa ggaccggaac gagaatgagg tggagtcgac cagcagcgcc
841 aacgaggaca tgccggtgga gaggatcctg gaggctgagc tggccgtgga gcccaagacc
901 gagacctacg tggaggcaaa catggggctg aaccccagct cgccgaacga ccctgtcacc
961 aacatttgcc aagcagccga caaacagctt ttcaccctgg tggagtgggc caagcggatc
1021 ccacacttct cagagctgcc cctggacgac caggtcatcc tgctgcgggc aggctggaat
1081 gagctgctca tcgcctcctt ctcccaccgc tccatcgccg tgaaggacgg gatcctcctg
1141 gccaccgggc tgcacgtcca ccggaacagc gcccacagcg caggggtggg cgccatcttt
1201 gacagggtgc tgacggagct tgtgtccaag atgcgggaca tgcagatgga caagacggag
1261 ctgggctgcc tgcgcgccat cgtcctcttt aaccctgact ccaaggggct ctcgaacccg
1321 gccgaggtgg aggcgctgag ggagaaggtc tatgcgtcct tggaggccta ctgcaagcac
1381 aagtacccag agcagccggg aaggttcgct aagctcttgc tccgcctgcc ggctctgcgc
1441 tccatcgggc tcaaatgcct ggaacatctc ttcttcttca agctcatcgg ggacacaccc
1501 attgacacct tccttatgga gatgctggag gcgccgcacc aaatgactta ggcctgcggg
1561 cccatccttt gtgcccaccc gttctggcca ccctgcctgg acgccagctg ttcttctcag
1621 cctgagccct gtccctgccc ttctctgcct ggcctgtttg gactttgggg cacagcctgt
1681 cactgctctg cctaagagat gtgttgtcac cctccttatt tctgttacta cttgtctgtg
1741 gcccagggca gtggctttcc tgaggcagca gccttcgtgg caagaactag cgtgagccca
1801 gccaggcgcc tccccaccgg gctctcagga caccctgcca caccccacgg ggcttgggcg
1861 actacagggt cttcgggccc cagccctgga gctgcaggag ttgggaacgg ggcttttgtt
1921 tccgttgctg tttatcgatg ctggttttca gaattcctgt gtggccctcc tgtctggagt
1981 gacatcttca tctgctctga atactggtgc ccagccagcc cgtgacagct tccccctaat
2041 caggagggga cagctggggg cgcaagctgg tgtgtcatca gcaaagacct cagccgcctc
2101 ggggatgaga ggggactcgt ggggcaagca agctgccctg tgctctgagt gagggggaag
2161 gtagcccctt tttccaaaga taactcacag ttttgccctc gagccaatga gaacatgagc
2221 tgccctctgt gcaaggtttc ggggccacct ccaggctgca ggggcgggtc actcaccccc
2281 ctgttttctc tctgccttgg tgttctggtt tcagactccc gactccccgt tcagaccaga
2341 gtgccccggc ccctccccag cctgagtctt ctccttgctc tgcggggtgg gctgagactt
2401 gtccttgttt cctgcagggc tggccctggc tcgggcaggg tggggcatca ccacctcact
2461 ggccttgctg gaggcacagg gctctgcgga cctgcagcca tctgtgaggc ccgcggggat
2521 gggaggggag gagggtggcc tgttggtttc cctcagaggg ggcaggtggc ctggagagag
2581 aggggctcag gaactgggag cctcgtgggt ggggcagatg ctccgcggcc tggagtggct
2641 ctgccggggc attggtggga cccctgctca ggccttctct ctggctgcca gttgtgtcta
2701 aaagactctt ggaatctgag aacccggagt cgcagcgccc tcgggcctgg gccacacgca
2761 ggccctggtg ggaccaccca gcctggtatt gtccacggac agcgttgttc acccagagcc
2821 ttacttggga gcctcactga acgcctgctc tggttgaagg tggggtgggg gcggggcttg
2881 gggcctccct ggctcagccc agtgcggcct ggcgctcctc ccgcaggctc tgcccccggg
2941 ctccggtggt gcggggccct ctcaggttga actcgcctct tttgcactgg aaggccctcc
3001 ctttggcctg agtacttttc ccgttcacgc ctcagtcccg tggacccagc ctttgtcagt
3061 ggcaggtgcc tgaacagagg gtggatgggg gggataccgg agggggtctt gtcttcccag
3121 ccgcagtcta ggaatgatgc gggggggtgg acgccttctc catagtcttt ccccacctgg
3181 agcaggggct tcctcagtgg tgaggggagc tgcctacagg ttggaccggg aggcagtggc
3241 ttggagaggc agctttccag ccttggtggg gaagaaagtg tccattcttt gccttcctgg
3301 agctcccagc cagagctgag cttaggcacc cgagtggagc ctgcagctga gtctgtgccc
3361 gagacaggct gtcagagatt ccagaagcct ctcctccccg ccgccctcca cccctgcctt
3421 tcagcgttgt ggatccctag aggtggcccc ctgcccgatc caccgtcctg aggcagagtg
3481 ttgagcctca tacctgtacc aggtccccgg ccagctgggc ccctcccagg cactgccagg
3541 aagccccagc tgcccctggc gggtgtggtg gaaatggcag gagggtgcag gtactcttgg
3601 ggccccagcg gtgggagtgc aaaagaccca acgccaacac ctggtgcctt ttgcagccag
3661 cgcccaccca tccgtgcccg gacccttggg aatgcccgcg gctccagagg aaaaagccca
3721 gggacggggc ctccgttgcg gggggtcggc tgcttcttgg gaactttgtc gtttccggcg
3781 ctggctggct ggctggctgt aaagcactga agccccccgg ccgccaaccc ctgaaagcag
3841 aacctggcct ccctggccac agcagcctta cccaccgctc tacgtgtccc gggcacttcc
3901 cgcagccttc ccgtcccttt ctcatcggcc ttgtagttgt acagtgctgt tggtttgaaa
3961 aggtgatgtg tggggagtgc ggctcatcac tgagtagaga ggtagaattt ctatttaacc
4021 agacctgtag tagtattacc aatccagttc aattaaggtg attttttgta attattatta
4081 ttttggtggg acaatcttta attttctaaa gatagcacta acatcagctc attagccacc
4141 tgtgcctgtc cccgccttgg cccggctgga tgaagcggct tccccgcagg gcccccactt
4201 cccagtggct gcttcctggg gacccagggc accccggcac cttcaggcac gctcctcagc
4261 tggtcacctc ccggctttgc cgttcagatg gggctcctga ggctcaggag tgaagatgcc
4321 acagagccgg gctcccctag gctgcgtcgg gcatgcttgg aagctggcct gccaggacct
4381 tccaccctgg ggcctgtgtc agccgccggc cctccgcacc ctggaagcac acggcctctg
4441 ggaaggacag ccctgacctt cggttttccg agcacggtgt ttcccaagaa ttctgggctg
4501 gcggcctggt ggcagtgctg gagatgaccc cgagcccctc cccgtggggc acccaggagg
4561 gccctgccgg aatgtgcagc ctgtgggtag tcggctggtg tccctgtcgt ggagctgggg
4621 tgcgtgatct ggtgctcgtc cacgcaggtg tgtggtgtaa acatgtatgt gctgtacaga
4681 gagacgcgtg tggagagagc cgcacaccag cgccacccag gaaaggcgga gcggttacca
4741 gtgttttgtg tttattttta atcaagacgt ttcccctgtt ttcctataaa tttgcttcgt
4801 gtaagcaagt acataaggac cctcctttgg tgaaatccgg gttcgaatga atatctcaag
4861 gcaggagatg catctatttt aagatgcttt ggagcagaca gctttagccg ttcccaatcc
4921 ttagcaatgc cttagctggg acgcatagct aatactttag agaggatgac agatccataa
4981 agagagtaaa gataagagaa aatgtctaaa gcatctggaa aggtaaaaaa aaaaatctat
5041 ttttgtacaa atgtaatttt atccctcatg tatacttgga tatggcgggg ggagggctgg
5101 gactgtttcg tttctgcttc tagagattga ggtgaaagct tcgtccgaga aacgccagga
5161 cagacgatgg cagaggagag ggctcctgtg acggcggcga ggcttgggag gaaaccgccg
5221 caatgggggt gtcttccctc ggggcaggag ggtgggcctg aggctttcaa gggttttctt
5281 ccctttcgag taatttttaa agccttgctc tgttgtgtcc tgttgccggc tctggccttc
5341 ctgtgactga ctgtgaagtg gcttctccgt acgattgtct ctgaaacatc gtggccgcag
5401 gtgccagggt ttgatggaca gtagcattag aattgtggaa aaggaacacg caaagggaga
5461 agtgtgagag gagaaacaaa atatgagcgt ttaaaataca tcgccattca gttcgaaaaa
5521 aaaaaaaaaa aaaa
//