LOCUS BC063823 3625 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens WD repeat domain 40A, mRNA (cDNA clone MGC:74575
IMAGE:6184796), complete cds.
ACCESSION BC063823
VERSION BC063823.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3625)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3625)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: d Column: 12.
FEATURES Location/Qualifiers
source 1..3625
/db_xref="H-InvDB:HIT000261200"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:74575 IMAGE:6184796"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3625
/gene="WDR40A"
/gene_synonym="DKFZp434O125"
/gene_synonym="MGC1058"
/gene_synonym="TCC52"
/db_xref="GeneID:25853"
/db_xref="HGNC:HGNC:19911"
CDS 261..1622
/gene="WDR40A"
/gene_synonym="DKFZp434O125"
/gene_synonym="MGC1058"
/gene_synonym="TCC52"
/codon_start=1
/product="WD repeat domain 40A"
/protein_id="AAH63823.1"
/db_xref="GeneID:25853"
/db_xref="HGNC:HGNC:19911"
/translation="MARKVVSRKRKAPASPGAGSDAQGPQFGWDHSLHKRKRLPPVKR
SLVYYLKNREVRLQNETSYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQ
VVCGTKCNTLFVVDVQTSQITKIPILKDQEPGGVTQQGCGIHAIELNPSRTLLATGGD
NPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDVLT
KSDARHNVSRVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYF
HLWKAENTLSKLLSTKLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSV
CSRERGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENL
KLTTGKGWLNHDETWRNYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAG
LWS"
BASE COUNT 895 a 858 c 817 g 1055 t
ORIGIN
1 ccgctcgccg tccttgcagg ctctgccgtc ggaaagccgc tcattctcgc ttccccttcc
61 ctttcccggc tcaagtcctt cctctctctt tcctttcttt ccgcctatct tttttctgct
121 gccgctccgg gtccgggcca ttttccgggc cgggcgcact aaggtgcgcg gccccggggc
181 ccagtatatg acccgccgtc ctgctatcct tcgcttcccc cgccccatgt ggctgcgggg
241 ccgcggcggc gctgcccact atggcccgga aagtagttag caggaagcgg aaagcgcccg
301 cctcgccggg agctgggagc gacgctcagg gcccgcagtt tggctgggat cactcgcttc
361 acaaaaggaa aagacttcct cctgtgaaga gatccttagt atactacttg aagaaccggg
421 aagtcaggct acagaatgaa accagctact ctcgagtgtt gcatggttat gcagcacagc
481 aacttcccag tctcctgaag gagagagagt ttcaccttgg gacccttaat aaagtgtttg
541 catctcagtg gttgaatcat aggcaagtgg tgtgtggcac aaaatgcaac acgctatttg
601 tcgtagatgt ccagacaagc cagatcacca agatccccat tctgaaagac caggagcctg
661 gaggtgtgac ccagcagggc tgtggtatcc atgccatcga gctgaatcct tctagaacac
721 tgctagccac tggaggagac aaccccaaca gtcttgccat ctatcgacta cctacgctgg
781 atcctgtgtg tgtaggagat gatggacaca aggactggat cttttccatc gcatggatca
841 gcgacactat ggcagtgtct ggctcacgtg atggttctat gggactctgg gaggtgacag
901 atgatgtttt gaccaaaagt gatgcgagac acaatgtgtc acgggtccct gtgtatgcac
961 acatcactca caaggcctta aaggacatcc ccaaagaaga cacaaaccct gacaactgca
1021 aggttcgggc tctggccttc aacaacaaga acaaggaact gggagcagtg tctctggatg
1081 gctactttca tctctggaag gctgaaaata cactatctaa gctcctctcc accaaactgc
1141 catattgccg tgagaatgtg tgtctggctt atggtagtga atggtcagtt tatgcagtgg
1201 gctcccaagc tcatgtctcc ttcttggatc cacggcagcc atcatacaac gtcaagtctg
1261 tctgttccag ggagcgaggc agtggaatcc ggtcagtgag tttctacgag cacatcatca
1321 ctgtgggaac agggcagggc tccctgctgt tctatgacat ccgagctcag agatttctgg
1381 aagagaggct ctcagcttgt tatgggtcca agcccagact agcaggggag aatctgaaac
1441 taaccactgg caaaggctgg ctgaatcatg atgaaacctg gaggaattac ttttcagaca
1501 ttgacttctt ccccaatgct gtttacaccc actgctacga ctcgtctgga acgaaactct
1561 ttgtggcagg aggtcccctc ccttcagggc tccatggaaa ctatgctggg ctctggagtt
1621 aatgacaact ccccaaatgc agagatttac actaacttcc attctcagtt tccttgtttc
1681 ttttgatttt ttttttccta attgtgtgag gctcttgtgt tttagtggga acaccaaagt
1741 ttgcctatag tttaggcact taataggaag aagctctgta cagaaatctg aaagttgttt
1801 tgctttttgt tttccccttt ggtaatcaaa attttactat cttttattat ttctggcttt
1861 tcaaccaaac attgttgcta atccctattt ttctttaagt gacacacatt ctcctgtctc
1921 tggcttcttc aggctgaaat gacatagtct ttctcaccct tacttcactc ttgagaggta
1981 gggctccttt ataattacat ggttgctctc agactttctg tgaaagtttg ggagctgtgt
2041 gtgtctgtgt gtgtgtgaga gagagatctt gtctgcgtgt gtgtgtgtga tcttgtgtgc
2101 ctgtaggtac tgtgtgtcac tgaaattacc tggagtgagg attacttgta attaaaatat
2161 ttataaaaga aacaacttta ttcacagagt ccagctttgg gactagtctg tatcttgttt
2221 tttaagtcta acaacactga taataggaag taaaaacaga aaggaaaaga aattaccact
2281 gggaaaatct ttttagttag attgtaggct tcctggggcc tcccatgcca ggactgcaaa
2341 gtgatccagc cctacctgtc ttcccacctg tgtgtccccc gtgtgggaag ttggtgtcac
2401 ttccccttcc caccctcaca tctgcttagc cagtagccac acccctaaaa catcagactc
2461 accatccagg tgcagctcca gaggctacaa aaggcttcat gggacttgaa tccccatcct
2521 agcttctctc tccttcccct caagacctga tctggtttta aggggcctgg agctgggagt
2581 ctcaagtctg ctaagattca catccatagc ccccatggct ttgaggagaa tcctctctgc
2641 cattcttcca atctccccag tgggttttgc tattattttc taaattgggt taagtctaag
2701 aaggtggggg tgagcagggg gtttatctgt gtgtagtgag tgcttcatgt gtggaatatt
2761 cattttctta ctgcagtggg acttggggtt gaagccaccc ctcctactct gttggcttag
2821 ccctgagatg gtgacaggct ggcctgcagt cagcatcatt gtgcatgtga cagcatcaat
2881 gtgattagta atttgtctgt tcctcccttg aactgtctgt ttagtctgag gtttttaaac
2941 ttgcaggcag ctgactgtga tgtccacttg ttccctgatt tttacacatc atgtcaaaga
3001 taacagctgt tcccacccac cagttcctct aagcacatac tctgcttttc tgtcaacatc
3061 ccattttggg gaaaggaaaa gtcatattta ttcctgcacc ccagtttttt aacttgttct
3121 cccagttgtc cccctcttct ctgggtgtaa gaagggaaat tggaaaaaaa attatatata
3181 tattctcctt ttaatggtgg ggggctactg gagaggagag acagcaagtc caccctaact
3241 tgttacacag cacataccac aggttctgga attctcatct tcgaacctag agaaataggt
3301 gctataaaca gggaattaag caaaatgctg gatgctatag atcttttaat tgtcttaatt
3361 ttttttctat tattaaacta caggctgtag atttcttagt tctcacagaa cttctatcat
3421 tttaaactga cttgtatatt taaaaaaaaa atcttcagta ggatgttttg tactattgct
3481 agaccctctt ctgtaatggg taatgcgttt gattgtttga gattttctgt ttttaaaaat
3541 gtagcacttg actttttgcc aaggaaaaaa ataaaaatta ttccagtgca aaaaaaaaaa
3601 aaaaaaaaaa aaaaaaaaaa aaaaa
//