LOCUS BC063700 2412 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily e, member 1, mRNA (cDNA clone
MGC:74664 IMAGE:4540040), complete cds.
ACCESSION BC063700
VERSION BC063700.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2412)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2412)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 134 Row: l Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45827732.
FEATURES Location/Qualifiers
source 1..2412
/db_xref="H-InvDB:HIT000261153"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:74664 IMAGE:4540040"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2412
/gene="SMARCE1"
/gene_synonym="BAF57"
/db_xref="GeneID:6605"
/db_xref="HGNC:HGNC:11109"
/db_xref="MIM:603111"
CDS 88..1323
/gene="SMARCE1"
/gene_synonym="BAF57"
/codon_start=1
/product="SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
/protein_id="AAH63700.1"
/db_xref="GeneID:6605"
/db_xref="HGNC:HGNC:11109"
/db_xref="MIM:603111"
/translation="MSKRPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGN
PGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGG
MWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQR
QSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSV
VTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGL
KVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQSSIVPEEEQAANKGEEKKD
DENIPMETEETHLEETTESQQNGEEGTSTPEDKESGQEGVDSMAEEGTSDSNTGSESN
SATVEEPPTDPIPEDEKKE"
BASE COUNT 793 a 489 c 529 g 601 t
ORIGIN
1 gggaagcgaa gccggagctg cgggcgcttt ttctgcccgc ggtgtctcag attcattctt
61 aaggaactga gaacttaatc ttccaaaatg tcaaaaagac catcttatgc cccacctccc
121 accccagctc ctgcaacaca aatgcccagc acaccagggt ttgtgggata caatccatac
181 agtcatctcg cctacaacaa ctacaggctg ggagggaacc cgggcaccaa cagccgggtc
241 acggcatcct ctggtatcac gattccaaaa cccccaaagc caccagataa gccgctgatg
301 ccctacatga ggtacagcag aaaggtctgg gaccaagtaa aggcttccaa ccctgaccta
361 aagttgtggg agattggcaa gattattggt ggcatgtggc gagatctcac tgatgaagaa
421 aaacaagaat atttaaacga atacgaagca gaaaagatag agtacaatga atctatgaag
481 gcctatcata attcccccgc gtaccttgct tacataaatg caaaaagtcg tgcagaagct
541 gctttagagg aagaaagtcg acagagacaa tctcgcatgg agaaaggaga accgtacatg
601 agcattcagc ctgctgaaga tccagatgat tatgatgatg gcttttcaat gaagcataca
661 gccaccgccc gtttccagag aaaccaccgc ctcatcagtg aaattcttag tgagagtgtg
721 gtgccagacg ttcggtcagt tgtcacaaca gctagaatgc aggtcctcaa acggcaggtc
781 cagtccttaa tggttcatca gcgaaaacta gaagctgaac ttcttcaaat agaggaacga
841 caccaggaga agaagaggaa attcctggaa agcacagatt catttaacaa tgaacttaaa
901 aggttgtgcg gtctgaaagt agaagtggat atggagaaaa ttgcagctga gattgcacag
961 gcagaggaac aggcccgcaa aaggcaggag gaaagggaga aggaggccgc agagcaagct
1021 gagcgcagtc agagcagcat cgttcctgag gaagaacaag cagctaacaa aggcgaggag
1081 aagaaagacg acgagaacat tccgatggag acagaggaga cacaccttga agaaacaaca
1141 gagagccaac agaatggtga agaaggcacg tctactcctg aggacaagga gagtgggcag
1201 gagggggtcg acagtatggc agaggaagga accagtgata gtaacactgg ctcggagagc
1261 aacagtgcaa cagtggagga gccaccaaca gatcccatac cagaagatga gaaaaaagaa
1321 taagtgttgc cttgttttgt gtgttctaaa tacttttttt aatgaaaaaa tgttttttgg
1381 ttttaatggt gttacgtggt ttgtgtatta attttttttc ttgtccatat cataccacca
1441 aaggcttttg gaccatttag catcatgagc ctaatggctc agtcagtcac ctttcttaag
1501 tgttgtgaag atggctcttt tctttggatc ttgtttctag ccctcaactg ctgaaagcct
1561 cagaatttag attaattgag aaaacaccca cctcttttag agaattatcc tttgatgctg
1621 cagaatctac tcttacaatg ccttcctaca gctcactggg gtgcttacca aagccatagc
1681 tttaaacctt cccagtcccc atcagtagct tcctgaaagt ctcctctctt gtttacttct
1741 gcaaagggta gcttcttaaa aacgtgatca tgtatgagta tgtatttgtt cacttaccct
1801 tttttacttt taatcaatgt cagataccaa gagttgtgtt aagctgagtg tagtgtgtaa
1861 ctaactacac ttggatctta ctgatccaga aatagtcccc atagttagag tagttactta
1921 tgaagtggtt attaaagtga acacagcaca tatacattat ctatactgct ttttgttatg
1981 attaatactg ggtatgttct ggtaaatcca tccttattgt atagaaaaaa aattactttt
2041 ttaccaggtt ttccaaagac agaatagatc acaaagctca aggaatttaa tattcttgta
2101 atggactaga taattcaaac tgattagccc attccagaag aaaaacagct gggaattaag
2161 ttaatccact tgaaattgtt ttacaataat cagaacatcc aaacctcaag gctcaggatc
2221 ccatagacca gagcccacct ttttgataaa cttagtaaag tcttggagac tagaagcaag
2281 atagtttgtg acacataagc ttcccaaaaa ctagaataga tttttactga atagtggtat
2341 atctgatggt atatgtttct taaaggtcca aatgtaataa aaaaaaaatg aaaaaaaaaa
2401 aaaaaaaaaa aa
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