LOCUS BC063691 2182 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens HMG box domain containing 3, mRNA (cDNA clone
IMAGE:4444369), partial cds.
ACCESSION BC063691
VERSION BC063691.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2182)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2182)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 134 Row: j Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2182
/db_xref="H-InvDB:HIT000261144"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4444369"
/tissue_type="Liver, adenocarcinoma"
/clone_lib="NIH_MGC_90"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2182
/gene="HMGXB3"
/gene_synonym="SMF"
/db_xref="GeneID:22993"
/db_xref="HGNC:HGNC:28982"
CDS <1..1223
/gene="HMGXB3"
/gene_synonym="SMF"
/codon_start=3
/product="HMGXB3 protein"
/protein_id="AAH63691.1"
/db_xref="GeneID:22993"
/db_xref="HGNC:HGNC:28982"
/translation="CGVAPKVEMAQRSEENVLALKSVEFTWPEFLGSNEVNVEDFWAT
METEVIEQVAFPASIPITKFDASVIAPFFPPLMRGAVVVNTEKDKNLDVQPVPGSGSA
LVRLLQEGTCKLDEIGSYSEEKLQHLLRQCGIPFGAEDSKDQLCFSLLALYESVQNGA
RAIRPPRHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVYVVDMAT
SVALCADLCYPELTNQMWGRNQGCFSSPTEPPVSVSCPELLDQHYTVDMTETEHSIQH
PVTKTATRRIVHAGLQPNPGDPSAGHHSLALCPELAPYATILASIVDSKPNGVRQRPI
AFDNATHYYLYNRLMDFLTSREIVNRQIHDIVQSCQPGEVVIRDTLYRLGVAQIKTET
EEEGEEEEVAAVAE"
BASE COUNT 479 a 592 c 618 g 493 t
ORIGIN
1 tctgtggtgt ggcccccaaa gtggaaatgg ctcagaggag tgaagagaat gtgctagcac
61 tgaagagcgt ggagttcacc tggcctgaat tcctgggctc taatgaggta aatgtggagg
121 acttttgggc cacgatggag acagaggtga ttgagcaggt ggcatttcct gccagcatcc
181 ctatcaccaa atttgatgcg tctgttattg cccccttctt cccaccactc atgagaggag
241 ctgtggtcgt caacactgag aaagacaaaa acctggatgt gcagccagta cctggcagtg
301 gcagtgcctt ggtgaggctg ctccaggagg gcacctgcaa gcttgatgag attggctcct
361 acagtgaaga gaagctgcag cacctgctaa ggcagtgtgg aatccccttt ggggcagaag
421 actccaagga ccagctctgc ttctccttgt tggccctcta cgaatctgta cagaatggag
481 ctagagctat acggccccca cgtcacttca caggtggtaa aatctacaag gtgtgccccc
541 atcaggtggt ctgcggctcc aagtatcttg tgcgaggtga gagtgcccgt gaccatgtgg
601 acctgcttgc ctcttcccgc cactggccgc ctgtctatgt ggtagatatg gccacgtcag
661 tggccctgtg tgctgacctc tgctacccag agctgactaa ccagatgtgg gggaggaacc
721 agggctgttt ctctagcccc acagagccac ctgtgagtgt gtcctgccca gagctcttgg
781 accagcatta tactgtggac atgacagaaa ctgagcactc tatccagcac ccagtcacca
841 agactgccac gcggcgcatc gtccatgcag gcctacagcc caatcctggt gaccccagtg
901 ctgggcacca ctccttggcc ctgtgccctg aattggcacc ttacgcaacc atcctggcct
961 ccatcgtgga cagcaaacca aacggtgtcc gccagcggcc cattgccttc gacaatgcca
1021 ctcactatta cctctacaac cgcctcatgg acttcctcac cagccgcgaa attgtcaatc
1081 gtcagatcca tgacattgta cagagctgcc agcctggtga ggtggtcatt cgtgacaccc
1141 tctaccgcct tggggttgct cagatcaaga cagagacaga ggaggagggt gaggaagagg
1201 aggtggccgc agtggcagaa taagccaggc tgttgtacag ggactacacc atctctcaag
1261 ccatagtaag gcccttgcct gaggcagagc tatccagggg acctgcagaa gtggtctcct
1321 gtggggaggg cctctgactg ctgggactga ccaaagagct tccattccct gagcatggtg
1381 ggacccaggg tcctcagttc tcaaccctcc aggggtcagg agtggtacca ggaaacctct
1441 tctggccccg agagagcact tgggggacac ggtatgttta atggagggga ggctgaggga
1501 aaggctgata gctggtgggt tccgtggggc ctgctgtgtg ggtcagggtg gaggtcctgg
1561 gtgggctaag gcgtgagccc cagcactagg tgggaaggct gctgaggtct ctcccacccc
1621 tgaggagccc tggtttcagc cccctcagtc tgatgaattg cttagcctgt tgcctttgac
1681 taggggcctg ggtggcctca ttaactctag gggtcccttt gggctcttga ttctccctga
1741 aggagggatg catttctctc ttgctcttcc tgtacccaca tttgggggaa gctgaggagg
1801 gaggaacagt cagccacagc tctcttccag cactgtcctc tccaccccaa gctttgagga
1861 agagcatccc cttcctcctt tccctggcca ctgctgctgc agccaatatc ctctctgggc
1921 ctgggaccct ctccacagag gggatgtggt ccctggtcat gacataacct agcagcagta
1981 ggaaaaactc ccttctatga aggggaagca gactgggcca taaggaaaca gcaggactgg
2041 ctcaagtgcc caaggtttgt ttagggcctg ggaattggcc atgtgttaat ttattgagtg
2101 gagtaggtgg ctttttttcc ctccctcttc ccccaacaag aataaagttt attaaattat
2161 ctggttaaaa aaaaaaaaaa aa
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