LOCUS BC063536 1594 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens BCL6 co-repressor, mRNA (cDNA clone IMAGE:4441370),
complete cds.
ACCESSION BC063536
VERSION BC063536.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1594)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1594)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 134 Row: i Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1594
/db_xref="H-InvDB:HIT000260994"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4441370"
/tissue_type="Liver, adenocarcinoma"
/clone_lib="NIH_MGC_90"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1594
/gene="BCOR"
/gene_synonym="FLJ20285"
/gene_synonym="KIAA1575"
/db_xref="GeneID:54880"
/db_xref="MIM:300485"
CDS 79..642
/gene="BCOR"
/gene_synonym="FLJ20285"
/gene_synonym="KIAA1575"
/codon_start=1
/product="BCOR protein"
/protein_id="AAH63536.1"
/db_xref="GeneID:54880"
/db_xref="MIM:300485"
/translation="MTHSELMEKFLTDYLNDLQGRNDDDASGTWDFYGSSVCEPDDES
GYDVLANPPGPEDQDDDDDAYSDVFEFEFSETPLLPCYNIQVSVAQGPRNWLLLSDVL
KKLKMSSRIFRCNFPNVEIVTIAEAEFYRQVSASLLFSCSKDLEAFNPESKELLDLVE
FTNEIQTLLGSSVEWLHPSDLASDNYW"
BASE COUNT 534 a 268 c 301 g 491 t
ORIGIN
1 ataagagaga agtagtcgga caatttccaa gtgatcgttc tcaacagcat cgtgcagagg
61 cctggttcca tcctgaaaat gacccacagt gaacttatgg aaaagttctt aacagattat
121 ttaaatgacc tccagggtcg caatgatgat gacgccagtg gcacttggga cttctatggc
181 agctctgttt gtgaaccaga tgatgaaagt ggctatgatg ttttagccaa ccccccagga
241 ccagaagacc aggatgatga tgacgatgcc tatagcgatg tgtttgaatt tgaattttca
301 gagacccccc tcttaccgtg ttataacatc caagtatctg tggctcaggg gccacgaaac
361 tggctactgc tttcggatgt ccttaagaaa ttgaaaatgt cctcccgcat atttcgctgc
421 aattttccaa acgtggaaat tgtcaccatt gcagaggcag aattttatcg gcaggtttct
481 gcaagtctct tgttctcttg ctccaaagac ctggaagcct tcaaccctga aagtaaggag
541 ctgttagatc tggtggaatt cacgaacgaa attcagactc tgctgggctc ctctgtagag
601 tggctccacc ccagtgatct ggcctcagac aactactggt gagcaagctg gacccaccat
661 gtacagtgtg ttatagtgtt aatccttgtg catatgtgtc ataatacaac tatttctgta
721 aagaaaggac actattacat atgaaaatat ctcttcttta tataagagaa attactccag
781 tcagaaggac ttagaaacat gtttttttcc ttttaaactt ttaagtcagt ttttatgaag
841 ttgttataat gtttctttac ttttcaatgc acacatgctt tgggatacgt ttgtttttac
901 ttggaacatt tgtttctttt cttttttaag gagaaaaaaa aaaatgagta aaaggagctc
961 cacactttga cttaatttca tacaaagctc tgatgacagg ccatgactgt agagtggtca
1021 gaactgtgtg gttggtttga gggagcgaat tcggggaagg cacttggtga tataactttg
1081 ttttgtttac agagtacctg ctcgggccag gtaaatgcta ttggatgtaa tccagtagtg
1141 tgtaatataa attcaaacca tatccacaca caacaactaa ttgtatgaaa cttttatatc
1201 ctaatttaaa agctgtgaaa ttagttttca cgcatcaaac cggattgttt atatgtttaa
1261 acattttatg ctcttattta aagaagactt tgagctattt ttttctgtac cctgtaaaat
1321 attgaaaact aacataatat gttgaggttg cttggaaatg tacataaaac taaaattttc
1381 tgaatcgtgt gtttatgttt gaaatctgtg ttttaacttt gtaagtaaat tctctgcctt
1441 tgtatttata ttttacaaaa attttcttaa aaggcaataa aactgttgag gaaaggagaa
1501 aaaaaaaatt tataaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
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