LOCUS BC063524 2864 bp mRNA linear HUM 23-DEC-2003 DEFINITION Homo sapiens retinoblastoma binding protein 6, mRNA (cDNA clone IMAGE:4369701), partial cds. ACCESSION BC063524 VERSION BC063524.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2864) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2864) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (08-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 134 Row: g Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 28077092. FEATURES Location/Qualifiers source 1..2864 /db_xref="H-InvDB:HIT000260982" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4369701" /tissue_type="Bone, osteosarcoma" /clone_lib="NIH_MGC_86" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..>2864 /gene="RBBP6" /gene_synonym="DKFZp761B2423" /gene_synonym="MY038" /gene_synonym="RBQ-1" /db_xref="GeneID:5930" /db_xref="MIM:600938" CDS 108..>2864 /gene="RBBP6" /gene_synonym="DKFZp761B2423" /gene_synonym="MY038" /gene_synonym="RBQ-1" /codon_start=1 /product="RBBP6 protein" /protein_id="AAH63524.1" /db_xref="GeneID:5930" /db_xref="MIM:600938" /translation="MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADC DLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKAI DDSSASISLAQLTKTANLAEANASEEDKIKAMMSQSGHEYDPINYMKKPLGPPPPSYT CFRCGKPGHYIKNCPTNGDKNFESGPRIKKSTGIPRSFMMEVKDPNMKGAMLTNTGKY AIPTIDAEAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICKDIMTDAVVIPCCG NSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYTKRLRK QLPPPPPPIPPPRPLIQRNLQPLMRSPISRQQDPLMIPVTSSSTHPAPSISSLTSNQS SLAPPVSGNPSSAPAPVPDITATVSISVHSEKSDGPFRTSSTGGSPVRKSEEKTDTKR TVIKTMEEYNNDNTAPAEDVIIMIQVPQSKWDKDDFESEEEDVKSTQPISSVGKPASV IKNVSTKPSNIVKYPEKESEPSEKIQKFTKDVSHEIIQHEVKSSKNSASSEKGKTKDR DYSVLEKENPEKRKNSTQPEKESNLDRLNEQGNFKSLSQSSKEARTSDKHDSTRASSN KDFTPNRDKKTDYDTREYSSSKRRDEKNELTRRKDSPSRNKDSASGQKNKPREERDLP KKGTGDSKKSNSSPSRDRKPHDHKATYDTKRPNEETKSVDKNPCKDREKHVLEARNNK ESSGNKLLYILNPPETQVEKEQITGQIDKSTVKPKPQLSHSSRLSSDLTRETDEAAFE PDYNESDSESNVSVKEEESSGNISKDLKDKIVEKAKESLDTAAVVQVGISRNQSHSSP SVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKKKKKKKKKKKKKKKKKKKKKK KKKKK" misc_feature 585..635 /gene="RBBP6" /gene_synonym="DKFZp761B2423" /gene_synonym="MY038" /gene_synonym="RBQ-1" /note="zf-CCHC; Region: Zinc knuckle. The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger" /db_xref="CDD:pfam00098" misc_feature 882..1004 /gene="RBBP6" /gene_synonym="DKFZp761B2423" /gene_synonym="MY038" /gene_synonym="RBQ-1" /note="RING; Region: Ring finger" /db_xref="CDD:smart00184" BASE COUNT 1080 a 581 c 543 g 660 t ORIGIN 1 gtctttgagt gttttgtgtg tacatatttt gctcttaaag tttataaata tacgtatatt 61 gagagtgtcc acgtctcctc gctgaacctt aggaatccct tggcaccatg tcctgtgtgc 121 attataaatt ttcctctaaa ctcaactatg ataccgtcac ctttgatggg ctccacatct 181 ccctctgcga cttaaagaag cagattatgg ggagagagaa gctgaaagct gccgactgcg 241 acctgcagat caccaatgcg cagacgaaag aagaatatac tgatgataat gctctgattc 301 ctaagaattc ttctgtaatt gttagaagaa ttcctattgg aggtgttaaa tctacaagca 361 agacatatgt tataagtcga actgaaccag cgatggcaac tacaaaagca attgatgact 421 cttccgcgtc tatttctctg gcccagctta caaagactgc caatctggct gaagccaatg 481 cttctgaaga agataaaatt aaagcaatga tgtcgcaatc tggccatgaa tacgacccaa 541 tcaattacat gaagaaacct ctaggtccac cacctccatc ttacacgtgt ttccgttgtg 601 gtaaacctgg acattatatt aagaattgcc caacaaatgg ggataaaaac tttgaatctg 661 gtcctaggat taaaaagagc actggaattc ccagaagttt catgatggaa gtgaaagatc 721 ctaatatgaa aggtgcaatg cttaccaaca ctggaaaata tgcaatacca actatagatg 781 cagaagcata tgcaattggg aagaaagaga aacctccctt cttaccagag gagccatctt 841 cttcctcaga agaagatgat cctatcccag atgaattgtt gtgtctcatc tgcaaggata 901 ttatgactga tgctgttgtg attccctgct gtggaaacag ttactgtgat gaatgtataa 961 gaacagcact cctggaatca gatgagcaca catgtccgac gtgtcatcaa aatgatgttt 1021 ctcctgatgc tttaattgcc aataaatttt tacgacaggc tgtaaataac ttcaaaaatg 1081 aaactggcta tacaaaaaga ctacgaaaac agttacctcc tccaccaccc ccaataccac 1141 ctccgagacc actgattcag aggaacctac aacctctgat gagatctccg atatcaagac 1201 aacaagatcc tcttatgatt ccagtgacat cttcatcaac tcacccagct ccgtctatat 1261 cttcattaac ttctaatcag tcttccttgg cccctcctgt gtctggaaat ccgtcttctg 1321 ctccagctcc tgtacctgat ataactgcaa cagtatccat atcagttcat tcagaaaaat 1381 cagatggacc ttttcgtacg agctcaactg gaggcagtcc tgtgcggaaa tctgaagaaa 1441 aaacagatac aaagcgaact gtgattaaaa cgatggaaga atataataat gacaataccg 1501 cgccagctga agatgttatc attatgattc aggttcctca atccaaatgg gataaagatg 1561 actttgaatc tgaagaagaa gatgttaaat ccacacagcc tatatcaagt gtaggaaaac 1621 ctgctagtgt tataaaaaat gttagtacaa agccatcaaa tatagtcaag tatcctgaga 1681 aagaaagtga gccatccgag aaaattcaga aattcaccaa ggacgtgagc catgaaatca 1741 tacaacatga ggttaaaagt tcaaaaaact ctgcatctag tgaaaaaggg aaaaccaaag 1801 atcgagatta ttcagtgttg gaaaaggaga accctgaaaa gaggaagaac agcactcagc 1861 cagagaaaga gagtaatttg gaccgtctga atgaacaagg aaattttaaa agtctgtctc 1921 aatcttccaa agaggctaga acgtcagata aacatgattc cactcgtgct tcctcaaata 1981 aagacttcac tcccaataga gacaaaaaaa ctgactatga caccagagag tattcaagtt 2041 ccaaacgtag agatgaaaag aatgaattaa caagacgaaa agactctcct tctcggaata 2101 aagattctgc atctggacag aaaaataaac caagggaaga gagagatttg cctaaaaaag 2161 gaacaggaga ttccaaaaaa agtaattcta gtccctcaag agacagaaaa cctcatgatc 2221 acaaagccac ttatgatact aaacggccaa atgaagagac aaaatctgta gataaaaatc 2281 cttgtaagga tcgtgagaag catgtattag aagcaaggaa caataaagag tcaagtggca 2341 ataaactact ttatatactt aacccaccag agacacaggt tgaaaaagag caaattactg 2401 ggcaaattga caagagtact gtcaagccta aaccccagtt aagtcattcc tctagacttt 2461 cctctgactt aactagagaa actgatgaag ctgcttttga accagactat aatgaaagtg 2521 acagtgaaag taatgtttct gtaaaagaag aggaatcttc aggaaacatt tctaaggacc 2581 tgaaagataa aatagtggag aaagcaaaag agagcctgga cacagcagca gttgtccagg 2641 tgggcataag caggaatcag agccacagca gccccagcgt cagccccagc agaagccaca 2701 gtccttctgg aagccagacc cgaagccaca gtagcagtgc cagctcagca gaaagtcagg 2761 acagcaagaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2821 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa //