LOCUS BC063291 5140 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens desmocollin 2, mRNA (cDNA clone MGC:71614
IMAGE:30337780), complete cds.
ACCESSION BC063291
VERSION BC063291.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5140)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5140)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: c Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40806176.
FEATURES Location/Qualifiers
source 1..5140
/db_xref="H-InvDB:HIT000260812"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71614 IMAGE:30337780"
/tissue_type="Placenta, pre-eclamptic"
/clone_lib="NIH_MGC_148"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5140
/gene="DSC2"
/gene_synonym="CDHF2"
/gene_synonym="DG2"
/gene_synonym="DGII/III"
/db_xref="GeneID:1824"
/db_xref="HGNC:HGNC:3036"
/db_xref="MIM:125645"
CDS 444..3149
/gene="DSC2"
/gene_synonym="CDHF2"
/gene_synonym="DG2"
/gene_synonym="DGII/III"
/codon_start=1
/product="desmocollin 2"
/protein_id="AAH63291.1"
/db_xref="GeneID:1824"
/db_xref="HGNC:HGNC:3036"
/db_xref="MIM:125645"
/translation="MEAARPSGSWNGALCRLLLLTLAILIFASDACKNVTLHVPSKLD
AEKLVGRVNLKECFTAANLIHSSDPDFQILEDGSVYTTNTILLSSEKRSFTILLSNTE
NQEKKKIFVFLEHQTKVLKKRHTKEKVLRRAKRRWAPIPCSMLENSLGPFPLFLQQVQ
SDTAQNYTIYYSIRGPGVDQEPRNLFYVERDTGNLYCTRPVDREQYESFEIIAFATTP
DGYTPELPLPLIIKIEDENDNYPIFTEETYTFTIFENCRVGTTVGQVCATDKDEPDTM
HTRLKYSIIGQVPPSPTLFSMHPTTGVITTTSSQLDRELIDKYQLKIKVQDMDGQYFG
LQTTSTCIINIDDVNDHLPTFTRTSYVTSVEENTVDVEILRVTVEDKDLVNTANWRAN
YTILKGNENGNFKIVTDAKTNEGVLCVVKPLNYEEKQQMILQIGVVNEAPFSREASPR
SAMSTATVTVNVEDQDEGPECNPPIQTVRMKENAEVGTTSNGYKAYDPETRSSSGIRY
KKLTDPTGWVTIDENTGSIKVFRSLDREAETIKNGIYNITVLASDQGGRTCTGTLGII
LQDVNDNSPFIPKKTVIICKPTMSSAEIVAVDPDEPIHGPPFDFSLESSTSEVQRMWR
LKAINDTAARLSYQNDPPFGSYVVPITVRDRLGMSSVTSLDVTLCDCITENDCTHRVD
PRIGGGGVQLGKWAILAILLGIALLFCILFTLVCGASGTSKQPKVIPDDLAQQNLIVS
NTEAPGDDKVYSANGFTTQTVGASAQGVCGTVGSGIKNGGQETIEMVKGGHQTSESCR
GAGHHHTLDSCRGGHTEVDNCRYTYSEWHSFTQPRLGEKVYLCNQDENHKHAQDYVLT
YNYEGRGSVAGSVGCCSERQEEDGLEFLDNLEPKFRTLAEACMKR"
BASE COUNT 1554 a 980 c 1065 g 1541 t
ORIGIN
1 gcttctgctg ggcagggccg gctgttaatc tcgcctggcg gagcggacac cggggcgtgg
61 tgggggagat gggccttata ggtggcgtcc gctggtgaga aacaccttgc gcaggtaaaa
121 gggtggcggc gagagggagt tcccacccgt ggctttctta gagaaatgaa gtcttaagtc
181 ttaaatagac aacaaggagg ggccgatcgg tgtcttttgg acgcgtctgg agcccctccc
241 tccgccaaag gaaaagcccc ttggatgaga ggcaggcgct tcagagaagc taagaaaagc
301 acctctccgc gcgccccacc tcctccgcct cgcgctcctc ctgagcagcg ggcccagact
361 gcgctccggc cgcggccctc gccccgcgga gccctcctac cccggcccga cgctcggccc
421 gcgacctgcc ccgagccctc tccatggagg cagcccgccc ctccggctcc tggaacggag
481 ccctctgccg gctgctcctg ctgaccctcg cgatcttaat atttgccagt gatgcctgca
541 aaaatgtgac attacatgtt ccctccaaac tagatgccga gaaacttgtt ggtagagtta
601 acctgaaaga gtgctttaca gctgcaaatc taattcattc aagtgatcct gacttccaaa
661 ttttggagga tggttcagtc tatacaacaa atactattct attgtcctcg gagaagagaa
721 gttttaccat attactttcc aacactgaga accaagaaaa gaagaaaata tttgtctttt
781 tggagcatca aacaaaggtc ctaaagaaaa gacatactaa agaaaaagtt ctaaggcgcg
841 ccaagagaag atgggctcca attccttgtt cgatgctaga aaactccttg ggtccttttc
901 cacttttcct tcaacaggtt caatctgaca cggcccaaaa ctataccata tactattcca
961 taagaggtcc tggagttgac caagaacctc ggaatttatt ttatgtggag agagacactg
1021 gaaacttgta ttgtactcgt cctgtagatc gtgagcagta tgaatctttt gagataattg
1081 cctttgcaac aactccagat gggtatactc cagaacttcc actgccccta ataatcaaaa
1141 tagaggatga aaatgataac tacccaattt ttacagaaga aacttatact tttacaattt
1201 ttgaaaattg cagagtgggc actactgtgg gacaagtgtg tgctactgac aaagatgagc
1261 ctgacacgat gcacacacgc ctgaagtact ccatcattgg gcaggtgcca ccatcaccca
1321 ccctattttc tatgcatcca actacaggcg tgatcaccac aacatcatct cagctagaca
1381 gagagttaat tgacaagtac cagttgaaaa taaaagtaca agacatggat ggtcagtatt
1441 ttggtctaca gacaacttca acttgtatca ttaacattga tgatgtaaat gaccacttgc
1501 caacatttac tcgtacttct tatgtgacat cagtggaaga aaatacagtt gatgtggaaa
1561 tcttacgagt tactgttgag gataaggact tagtgaatac tgctaactgg agagctaatt
1621 ataccatttt aaagggcaat gaaaatggca attttaaaat tgtaacagat gccaaaacca
1681 atgaaggagt tctttgtgta gttaagcctt tgaattatga agaaaagcaa cagatgatct
1741 tgcaaattgg tgtagttaat gaagctccat tttccagaga ggctagtcca agatcagcca
1801 tgagcacagc aacagttact gttaatgtag aagatcagga tgagggccct gagtgtaacc
1861 ctccaataca gactgttcgc atgaaagaaa atgcagaagt gggaacaaca agcaatggat
1921 ataaagcata tgacccagaa acaagaagta gcagtggcat aaggtataag aaattaactg
1981 atccaacagg gtgggtcacc attgatgaaa atacaggatc aatcaaagtt ttcagaagcc
2041 tggatagaga ggcagagacc atcaaaaatg gcatatataa tattacagtc cttgcatcag
2101 accaaggagg gagaacatgt acggggacac tgggcattat acttcaagac gtgaatgata
2161 acagcccatt catacctaaa aagacagtga tcatctgcaa acccaccatg tcatctgcgg
2221 agattgttgc ggttgatcct gatgagccta tccatggccc accctttgac tttagtctgg
2281 agagttctac ttcagaagta cagagaatgt ggagactgaa agcaattaat gatacagcag
2341 cacgtctttc ctatcagaat gatcctccat ttggctcata tgtagtacct ataacagtga
2401 gagatagact tggcatgtct agtgtcactt cattggatgt tacactgtgt gactgcatta
2461 ccgaaaatga ctgcacacat cgtgtagatc caaggattgg cggtggagga gtacaacttg
2521 gaaagtgggc catccttgca atattgttgg gcatagcatt gctcttttgc atcctgttta
2581 cgctggtctg tggggcttct gggacgtcta aacaaccaaa agtaattcct gatgatttag
2641 cccagcagaa cctaattgta tcaaacacag aagctcctgg agatgacaaa gtgtattctg
2701 cgaatggctt cacaacccaa actgtgggcg cttctgctca gggagtttgt ggcaccgtgg
2761 gatcaggaat caaaaacgga ggtcaggaga ccatcgaaat ggtgaaagga ggacaccaga
2821 cctcggaatc ctgccggggg gctggccacc atcacaccct ggactcctgc aggggaggac
2881 acacggaggt ggacaactgc agatacactt actcggagtg gcacagtttt actcagcccc
2941 gtcttggtga aaaagtgtat ctgtgtaatc aagatgaaaa tcacaagcat gcccaagact
3001 atgtcctgac atataactat gaaggaagag gatcggtggc tgggtctgta ggttgttgca
3061 gtgaacgaca agaagaagat gggcttgaat ttttggataa tttggagccc aaatttagga
3121 cactagcaga agcatgcatg aagagatgag agtgttctaa taagtctctg aaagccagtg
3181 gctttatgac ttttaaaaaa aattacaaac caagaatttt ttaaagcaga agatgctatt
3241 tgtgggggtt tttctctcat tatttggatg gaatctcttt ggtcaaatgc acatttacag
3301 agagacacta taaacaagta cacaaatttt tcaattttta catattttta aattacttat
3361 cttctatcca aggaggtcta cagagaaatt aaagtctgcc ttatttgtta catttgggta
3421 taatgacaac agccaattta tagtgcaata aaatgtaatt aattcaagtc cttattatag
3481 actatttgaa gcacaaccta atggaaaatt gtagagacct tgctttaaca ttatctccag
3541 ttaattaagt gttcatgtgg tgcttggaaa ctgttgtttt cctgaacatc taaagtgtgt
3601 agactgcatt cttgctatta ttttattctt gtaatgtgac cttttcactg tgcaaaggga
3661 gatttctagc caggcattga ctattacaat ttcattttgg tggagtttag ttttaggttt
3721 tattgtatat aaaatcctgc actgaatctg tgtctcctct gttacctact tttgccagtg
3781 aaatttaagt tttaaaatac tttcagaatg tatttttact actgcaagtt tttggtcttt
3841 aaaatgtcaa gtagcatctc tctctttctc tctgtctctt tctgtttctc tctccagttt
3901 tttttttttt tttaatttcc atatgggcta aagaatccaa atattttaaa aatctgtctc
3961 tcttttcttc tctcataaag tgaattattc cttttttttg ttttatgtaa gtgtatatat
4021 tcttagtttt tcttgaaatc attgtaatgt taactttgtt gtttcaaata tcttggtgat
4081 tgcttcatta tctcttcaac aaaaaaaacc tttaattttg ccattgaaac tgtagaacta
4141 tgccatgctt ttattagaag cagtgctctg tgttaacaac aagaatggtg taattagaat
4201 tgggatgtgg atatttactg tatgacaaca catttacagt tctgtaatgc aaggatgcag
4261 tttaaaaatg tgaagtagtg atggtttttg aaataagctt taaaatatag ggatcttgaa
4321 ggctccctgg ggtaactatt ttataactta gataaaatgg ctagtcatat ctgtgtgttt
4381 gtaaagttat ttttttaata ttttaagatt acaattttaa caaatgtaga aatgagccaa
4441 actatttaaa ttttaaaaca gtaaaacaaa atgaaactta atagctcaca aaattccagt
4501 ccatgtttca tgacttattt tagtcaatga attttctatt tatactaaac atatggacat
4561 tttaaatgtg tttctaatat ttttgattat ctataatgtg cctgtcttca attcacaaga
4621 ttgggttata acaattattt gccagattaa cactagggaa ttatttgata accagcttat
4681 cttatcagta gttttattgc tgatcaggca aaaatagttt tccaaagtta tttttaataa
4741 agtatataca aaattcttat atattactag tcatgataaa gtaaattaag cagtttttaa
4801 aacttagtgt gagtttgttc atcacaggtc tgatatgagt ttaagggatt tcgcactccc
4861 tgaatcagag aagtaagacc ccttccttag attcctgtta tacatttttt aaaatgtaga
4921 gtttgttttg gagacatttt cagtgcattg ttattgccat atttatataa tatgactatt
4981 ctaaaggctg tgaggccatg gggtattggt taagttgctt gcttttgctt tgtccatttt
5041 catcatttta aaatggggga taataacaga acttgtttcc tagggccatt gtaagtcact
5101 tgaataaaaa atagttttga agctaaaaaa aaaaaaaaaa
//