LOCUS BC063046 1879 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens proline-rich transmembrane protein 1, mRNA (cDNA clone
MGC:65172 IMAGE:5197474), complete cds.
ACCESSION BC063046
VERSION BC063046.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1879)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1879)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 119 Row: d Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361926.
FEATURES Location/Qualifiers
source 1..1879
/db_xref="H-InvDB:HIT000260753_11"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:65172 IMAGE:5197474"
/tissue_type="Brain, adult, 6 pooled whole brains"
/clone_lib="NIH_MGC_114"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1879
/gene="PRRT1"
/gene_synonym="NG5"
/db_xref="GeneID:80863"
/db_xref="HGNC:HGNC:13943"
CDS 65..985
/gene="PRRT1"
/gene_synonym="NG5"
/codon_start=1
/product="proline-rich transmembrane protein 1"
/protein_id="AAH63046.1"
/db_xref="GeneID:80863"
/db_xref="HGNC:HGNC:13943"
/translation="MSSEKSGLPDSVPHTSPPPYNAPQPPAEPPAPPPQAAPSSHHHH
HHHYHQSGTATLPRLGAGGLASSAATAQRGPSSSATLPRPPHHAPPGPAAGAPPPGCA
TLPRMPPDPYLQETRFEGPLPPPPPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTLPL
GGYVAPGYPLQLQPCTAYVPVYPVGTPYAGGTPGGTGVTSTLPPPPQGPGLALLEPRR
PPHDYMPIAVLTTICCFWPTGIIAIFKAVQVRTALARGDMVSAEIASREARNFSFISL
AVGIAAMVLCTILTVVIIIAAQHHENYWDP"
BASE COUNT 346 a 742 c 448 g 343 t
ORIGIN
1 ctccagcacc ggccgaggac ccccactccg gctgcaggga ccctgtccca gcgagaccgc
61 aggcatgtca tccgaaaagt caggactccc agactcagtc cctcacactt ctccgccgcc
121 ctacaatgcc cctcagcctc cagccgaacc cccagcccca ccgccacagg cagccccttc
181 ctcacaccat caccaccacc accactacca tcagtctggc accgccaccc tcccgcgctt
241 aggggcaggg ggcctggcct cttccgcggc caccgctcag cgcggtccct cctcctctgc
301 cacgctgccg aggccccccc accacgcccc tcccggccct gctgccgggg cacccccacc
361 cggctgcgct accttgcccc gcatgccacc cgacccttac ctgcaggaga ctcgcttcga
421 gggcccactt cccccgccgc cgcccgctgc cgccgccccg cccccgccgg cgccagccca
481 gactgcccag gcccctggct tcgtggtgcc cacgcacgcg gggactgtgg gcacgctgcc
541 gctggggggc tacgtagcgc ccggataccc cctgcagctg cagccttgca ctgcttacgt
601 gccggtctac ccggtgggca cgccatatgc aggcgggacc ccggggggaa caggagtgac
661 ctccactctc cccccgccgc cccagggccc agggctggcc ctactggagc cgaggcgccc
721 gccacacgac tacatgccca tcgcggtgct gaccaccatc tgttgcttct ggcctactgg
781 catcattgcc atcttcaagg ccgtgcaggt gcgcacggcc ttggcccgcg gagacatggt
841 gtcggccgag atcgcttcac gcgaggcccg gaacttctcc ttcatctccc tggccgtggg
901 catcgcggcc atggtgctct gtaccatcct caccgtagtc atcatcatcg ccgcgcagca
961 ccacgagaac tactgggatc cctaaaaacg cccctggtcc ggccccactc tgcgcccctc
1021 gatctcccag gctctttctg cagtcatacc gcggacccaa tgggcgccct gcacacccgt
1081 ttctggggcc gtcagacttg gatacatcgt aaactccgcc tccacggaac gtctcgcctt
1141 gcgagcaagc tcggaatcca gttcctcagg aacccctcca aaacccacac ccccagggac
1201 gccgctttcc gggatcccgg ccaaacgccg gaccctcagt cgctccaggc cccctcaccc
1261 tcaaagtgta gcgcccccaa ccgagcaacc tcggtttggt ccctaaaacc ccgcctcctc
1321 tataagcacc gccccagctc tgacaaaacc ccgcctccag gtcggcaggc tccgccttct
1381 tttcttctcc gcggggtgat tcagtccagt gattgggttt gtggctccag gcctcgccca
1441 cagacggaca gacccctccc tttcttccgg caaaaggacc gagccctggg gtagtaaggc
1501 ccccacactc ctgttttttg caagtacatt tttgtccctc ctccacccag gtatctgcct
1561 attttcttgc taatcccaga acctttcctt ttgctttttt taaggacatt tgggaagttc
1621 ctggtgtagg acccttctcc ctgggataag aaacctgcct gtaaacgctc tgtaaatact
1681 cccttccacc catcccagcc cctgggcagc cgggcagaag ggaatccagg ctatggacct
1741 cccaagtccc cgctccccgc tcccctcggc ggccccgcct tgttctgatc tgtgtgtgag
1801 tgtgtgtgaa cttctgaaag acaatattaa agagacttag ttgaaaaaaa aaaaaaaaaa
1861 aaaaaaaaaa aaaaaaaaa
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