LOCUS BC063033 2469 bp mRNA linear SYN 02-SEP-2016
DEFINITION Synthetic construct Homo sapiens tetratricopeptide repeat domain 3,
mRNA (cDNA clone IMAGE:4525077), partial cds.
ACCESSION BC063033
VERSION BC063033.1
KEYWORDS .
SOURCE synthetic construct
ORGANISM synthetic construct
other sequences; artificial sequences.
REFERENCE 1 (bases 1 to 2469)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2469)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 119 Row: b Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21359840.
FEATURES Location/Qualifiers
source 1..2469
/db_xref="H-InvDB:HIT000260740"
/organism="synthetic construct"
/mol_type="mRNA"
/isolation_source="Homo sapiens; Testis, embryonal
carcinoma"
/db_xref="taxon:32630"
/clone="IMAGE:4525077"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2469
/gene="TTC3"
/gene_synonym="DCRR1"
/gene_synonym="RNF105"
/gene_synonym="TPRD"
/gene_synonym="TPRDI"
/gene_synonym="TPRDII"
/gene_synonym="TPRDIII"
/db_xref="GeneID:7267"
/db_xref="MIM:602259"
CDS 124..>2469
/gene="TTC3"
/gene_synonym="DCRR1"
/gene_synonym="RNF105"
/gene_synonym="TPRD"
/gene_synonym="TPRDI"
/gene_synonym="TPRDII"
/gene_synonym="TPRDIII"
/codon_start=1
/transl_table=11
/product="TTC3 protein"
/protein_id="AAH63033.1"
/db_xref="GeneID:7267"
/db_xref="MIM:602259"
/translation="MDNFAEGDFTVADYALLEDCPHVDDCVFAAEFMSNDYVRVTQLY
CDGVGVQYKDYIQSERNLEFDICSIWCSKPISVLQDYCDAIKINIFWPLLFQHQNSSV
ISRLHPCVDANNSRASEINLKKLQHLELMEDIVDLAKKVANDSFLIGGLLRIGCKIEN
KILAMEEALNWIKYAGDVTILTKLGSIDNCWPMLSIFFTEYKYHITKIVMEDCNLLEE
LKTQSCMDCIEEGELMKMKGNEEFSKERFDIAIIYYTRAIEYRPENYLLYGNRALCFL
RTGQFRNALGDGKRATILKNTWPKGHYRYCDALSMLGEYDWALQANIKAQKLCKNDPE
GIKDLIQQHVKLQKQIEDLQGRTANKDPIKAFYENRAYTPRSLSAPIFTTSLNFVEKE
RDFRKINHEMANGGNQNLKVADEALKVDDCDCHPEFSPPSSQPPQHKGKQKSRNNESE
KFSSSSPLTLPADLKNILEKQFSKSSRAAHQDFANIMKMLRSLIQDGYMALLEQRCRS
AAQAFTELLNGLDPQKIKQLNLAMINYVLVVYGLAISLLGIGQPEELSEAENQFKRII
EHYPSEGLDCLAYCGIGKVYLKKNRFLEALNHFEKARTLIYRLPGVLTWPTSNVIIEE
SQPQKIKMLLEKFVEECKFPPVPDAICCYQKCHGYSKIQIYITDPDFKGFIRISCCQY
CKIEFHMNCWKKLKTTTFNDKIDKDFLQGICLTPDCEGVISKIIIFSSGGEVKCEFEH
KVIKEKVPPRPILKQKCSSLEKLRLKEDKKLKRKIQKKKKKK"
misc_feature 817..1116
/gene="TTC3"
/gene_synonym="DCRR1"
/gene_synonym="RNF105"
/gene_synonym="TPRD"
/gene_synonym="TPRDI"
/gene_synonym="TPRDII"
/gene_synonym="TPRDIII"
/note="TPR; Region: Tetratricopeptide repeat domain"
/db_xref="CDD:cd00189"
misc_feature 1600..1929
/gene="TTC3"
/gene_synonym="DCRR1"
/gene_synonym="RNF105"
/gene_synonym="TPRD"
/gene_synonym="TPRDI"
/gene_synonym="TPRDII"
/gene_synonym="TPRDIII"
/note="TPR; Region: Tetratricopeptide repeat domain"
/db_xref="CDD:cd00189"
BASE COUNT 813 a 436 c 543 g 677 t
ORIGIN
1 cggacgcgtg ggtcgaccca cgcgtccggt ggagggccgg aggtggcggc ggcggcggcg
61 gcggctgctg ctgctgctgc ccgcgtccga ggctcgcggg cggcgggccc ggacttgtgc
121 accatggaca attttgctga gggagatttc actgtggcgg attatgcctt gttagaagat
181 tgccctcacg tggatgattg tgtctttgct gctgaattta tgagcaatga ttatgttcgt
241 gtgactcagc tttactgtga tggggtgggt gtgcaatata aagattatat ccaaagtgag
301 aggaatttgg aatttgacat ctgcagtata tggtgtagta aaccaatttc tgtcctgcaa
361 gattattgcg atgccattaa aataaacatc ttctggccac ttctgtttca acatcaaaac
421 agttccgtaa tatcacgatt gcatccctgt gtggacgcca acaattcacg tgcttctgag
481 ataaatttga agaaactaca acatcttgag ttgatggaag atattgtgga tttggcaaag
541 aaagttgcta atgattcatt ccttattgga ggcttattga gaattggttg taaaatagaa
601 aataaaatct tggcaatgga agaagctctg aattggataa aatatgcagg cgatgtaaca
661 attctaacta aattaggatc aattgacaat tgttggccta tgttaagtat tttctttact
721 gaatacaagt accacataac taaaattgta atggaagact gcaatttgct tgaagaactt
781 aaaactcaaa gttgtatgga ttgtatagag gaaggagaac taatgaaaat gaaaggaaat
841 gaagagtttt ccaaagaaag atttgatata gctattatct attacaccag agccattgaa
901 tatagacctg aaaactacct tctttatggt aaccgagctc tttgttttct tcgtactgga
961 cagtttagaa atgcactcgg tgatggaaag agagccacta ttctgaagaa cacttggcca
1021 aagggtcatt atcgttattg tgatgctctt tctatgctgg gggaatatga ctgggccctg
1081 caagcaaaca taaaagctca aaaactctgt aaaaatgacc ctgagggaat caaggatcta
1141 attcagcagc atgtaaagtt acaaaaacaa atagaagacc tacaaggtcg aacagcaaat
1201 aaggatccaa ttaaagcctt ttatgaaaac agggcctaca cacctaggag tttatcagca
1261 cctatattta ctacttcact taactttgtg gagaaggaaa gagatttcag aaaaattaat
1321 cacgaaatgg ccaacggtgg taatcagaat ctaaaggtgg cggatgaggc gttgaaggta
1381 gatgattgtg actgtcatcc tgaattttca ccaccatcaa gtcagcctcc acaacataaa
1441 ggaaaacaaa aatctcgaaa caatgaatca gaaaagttca gttctagttc accattgact
1501 ttaccagcag atttgaagaa catcttggag aaacagtttt ctaaatcttc cagagctgca
1561 caccaggatt ttgctaatat aatgaaaatg ctgagaagct taattcaaga tggctatatg
1621 gccttattgg agcagcgttg ccgcagcgct gcacaggcct ttacagagtt gctgaacggt
1681 ttagatcctc aaaaaataaa gcaattgaac ctggccatga ttaactatgt tttggtcgtc
1741 tatggacttg ccatttctct ccttggaata ggacagcctg aggaattatc tgaagccgaa
1801 aaccagttta agaggattat tgaacactac cccagtgagg gccttgattg cttggcctac
1861 tgtggaattg gaaaagtgta tttgaaaaaa aacagatttc tagaagctct caatcacttt
1921 gagaaagcaa gaaccttgat ttatcgtctt cctggagtgt taacttggcc cacgagtaat
1981 gtgattattg aagagtctca gccacaaaaa ataaagatgc tgttagagaa atttgttgaa
2041 gaatgcaagt tccctccagt gccagatgcc atttgttgct atcagaagtg ccatggatat
2101 tctaagatcc agatatacat aactgatcca gactttaagg gttttatacg catcagctgt
2161 tgccagtact gtaaaataga atttcacatg aattgctgga agaagttaaa aactacaacc
2221 tttaatgata aaattgacaa ggattttcta caaggaatat gtcttacccc tgactgtgaa
2281 ggtgtcattt ctaagattat catcttcagc agtggtggtg aagttaaatg tgaatttgaa
2341 cacaaggtca taaaagaaaa ggttcctcca agacctattc tgaaacagaa atgttctagc
2401 ctagagaaac taagactgaa agaagacaaa aaattgaaga gaaagatcca aaaaaaaaaa
2461 aaaaaaaaa
//