LOCUS BC063033 2469 bp mRNA linear SYN 02-SEP-2016 DEFINITION Synthetic construct Homo sapiens tetratricopeptide repeat domain 3, mRNA (cDNA clone IMAGE:4525077), partial cds. ACCESSION BC063033 VERSION BC063033.1 KEYWORDS . SOURCE synthetic construct ORGANISM synthetic construct other sequences; artificial sequences. REFERENCE 1 (bases 1 to 2469) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2469) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (02-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 119 Row: b Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21359840. FEATURES Location/Qualifiers source 1..2469 /db_xref="H-InvDB:HIT000260740" /organism="synthetic construct" /mol_type="mRNA" /isolation_source="Homo sapiens; Testis, embryonal carcinoma" /db_xref="taxon:32630" /clone="IMAGE:4525077" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..>2469 /gene="TTC3" /gene_synonym="DCRR1" /gene_synonym="RNF105" /gene_synonym="TPRD" /gene_synonym="TPRDI" /gene_synonym="TPRDII" /gene_synonym="TPRDIII" /db_xref="GeneID:7267" /db_xref="MIM:602259" CDS 124..>2469 /gene="TTC3" /gene_synonym="DCRR1" /gene_synonym="RNF105" /gene_synonym="TPRD" /gene_synonym="TPRDI" /gene_synonym="TPRDII" /gene_synonym="TPRDIII" /codon_start=1 /transl_table=11 /product="TTC3 protein" /protein_id="AAH63033.1" /db_xref="GeneID:7267" /db_xref="MIM:602259" /translation="MDNFAEGDFTVADYALLEDCPHVDDCVFAAEFMSNDYVRVTQLY CDGVGVQYKDYIQSERNLEFDICSIWCSKPISVLQDYCDAIKINIFWPLLFQHQNSSV ISRLHPCVDANNSRASEINLKKLQHLELMEDIVDLAKKVANDSFLIGGLLRIGCKIEN KILAMEEALNWIKYAGDVTILTKLGSIDNCWPMLSIFFTEYKYHITKIVMEDCNLLEE LKTQSCMDCIEEGELMKMKGNEEFSKERFDIAIIYYTRAIEYRPENYLLYGNRALCFL RTGQFRNALGDGKRATILKNTWPKGHYRYCDALSMLGEYDWALQANIKAQKLCKNDPE GIKDLIQQHVKLQKQIEDLQGRTANKDPIKAFYENRAYTPRSLSAPIFTTSLNFVEKE RDFRKINHEMANGGNQNLKVADEALKVDDCDCHPEFSPPSSQPPQHKGKQKSRNNESE KFSSSSPLTLPADLKNILEKQFSKSSRAAHQDFANIMKMLRSLIQDGYMALLEQRCRS AAQAFTELLNGLDPQKIKQLNLAMINYVLVVYGLAISLLGIGQPEELSEAENQFKRII EHYPSEGLDCLAYCGIGKVYLKKNRFLEALNHFEKARTLIYRLPGVLTWPTSNVIIEE SQPQKIKMLLEKFVEECKFPPVPDAICCYQKCHGYSKIQIYITDPDFKGFIRISCCQY CKIEFHMNCWKKLKTTTFNDKIDKDFLQGICLTPDCEGVISKIIIFSSGGEVKCEFEH KVIKEKVPPRPILKQKCSSLEKLRLKEDKKLKRKIQKKKKKK" misc_feature 817..1116 /gene="TTC3" /gene_synonym="DCRR1" /gene_synonym="RNF105" /gene_synonym="TPRD" /gene_synonym="TPRDI" /gene_synonym="TPRDII" /gene_synonym="TPRDIII" /note="TPR; Region: Tetratricopeptide repeat domain" /db_xref="CDD:cd00189" misc_feature 1600..1929 /gene="TTC3" /gene_synonym="DCRR1" /gene_synonym="RNF105" /gene_synonym="TPRD" /gene_synonym="TPRDI" /gene_synonym="TPRDII" /gene_synonym="TPRDIII" /note="TPR; Region: Tetratricopeptide repeat domain" /db_xref="CDD:cd00189" BASE COUNT 813 a 436 c 543 g 677 t ORIGIN 1 cggacgcgtg ggtcgaccca cgcgtccggt ggagggccgg aggtggcggc ggcggcggcg 61 gcggctgctg ctgctgctgc ccgcgtccga ggctcgcggg cggcgggccc ggacttgtgc 121 accatggaca attttgctga gggagatttc actgtggcgg attatgcctt gttagaagat 181 tgccctcacg tggatgattg tgtctttgct gctgaattta tgagcaatga ttatgttcgt 241 gtgactcagc tttactgtga tggggtgggt gtgcaatata aagattatat ccaaagtgag 301 aggaatttgg aatttgacat ctgcagtata tggtgtagta aaccaatttc tgtcctgcaa 361 gattattgcg atgccattaa aataaacatc ttctggccac ttctgtttca acatcaaaac 421 agttccgtaa tatcacgatt gcatccctgt gtggacgcca acaattcacg tgcttctgag 481 ataaatttga agaaactaca acatcttgag ttgatggaag atattgtgga tttggcaaag 541 aaagttgcta atgattcatt ccttattgga ggcttattga gaattggttg taaaatagaa 601 aataaaatct tggcaatgga agaagctctg aattggataa aatatgcagg cgatgtaaca 661 attctaacta aattaggatc aattgacaat tgttggccta tgttaagtat tttctttact 721 gaatacaagt accacataac taaaattgta atggaagact gcaatttgct tgaagaactt 781 aaaactcaaa gttgtatgga ttgtatagag gaaggagaac taatgaaaat gaaaggaaat 841 gaagagtttt ccaaagaaag atttgatata gctattatct attacaccag agccattgaa 901 tatagacctg aaaactacct tctttatggt aaccgagctc tttgttttct tcgtactgga 961 cagtttagaa atgcactcgg tgatggaaag agagccacta ttctgaagaa cacttggcca 1021 aagggtcatt atcgttattg tgatgctctt tctatgctgg gggaatatga ctgggccctg 1081 caagcaaaca taaaagctca aaaactctgt aaaaatgacc ctgagggaat caaggatcta 1141 attcagcagc atgtaaagtt acaaaaacaa atagaagacc tacaaggtcg aacagcaaat 1201 aaggatccaa ttaaagcctt ttatgaaaac agggcctaca cacctaggag tttatcagca 1261 cctatattta ctacttcact taactttgtg gagaaggaaa gagatttcag aaaaattaat 1321 cacgaaatgg ccaacggtgg taatcagaat ctaaaggtgg cggatgaggc gttgaaggta 1381 gatgattgtg actgtcatcc tgaattttca ccaccatcaa gtcagcctcc acaacataaa 1441 ggaaaacaaa aatctcgaaa caatgaatca gaaaagttca gttctagttc accattgact 1501 ttaccagcag atttgaagaa catcttggag aaacagtttt ctaaatcttc cagagctgca 1561 caccaggatt ttgctaatat aatgaaaatg ctgagaagct taattcaaga tggctatatg 1621 gccttattgg agcagcgttg ccgcagcgct gcacaggcct ttacagagtt gctgaacggt 1681 ttagatcctc aaaaaataaa gcaattgaac ctggccatga ttaactatgt tttggtcgtc 1741 tatggacttg ccatttctct ccttggaata ggacagcctg aggaattatc tgaagccgaa 1801 aaccagttta agaggattat tgaacactac cccagtgagg gccttgattg cttggcctac 1861 tgtggaattg gaaaagtgta tttgaaaaaa aacagatttc tagaagctct caatcacttt 1921 gagaaagcaa gaaccttgat ttatcgtctt cctggagtgt taacttggcc cacgagtaat 1981 gtgattattg aagagtctca gccacaaaaa ataaagatgc tgttagagaa atttgttgaa 2041 gaatgcaagt tccctccagt gccagatgcc atttgttgct atcagaagtg ccatggatat 2101 tctaagatcc agatatacat aactgatcca gactttaagg gttttatacg catcagctgt 2161 tgccagtact gtaaaataga atttcacatg aattgctgga agaagttaaa aactacaacc 2221 tttaatgata aaattgacaa ggattttcta caaggaatat gtcttacccc tgactgtgaa 2281 ggtgtcattt ctaagattat catcttcagc agtggtggtg aagttaaatg tgaatttgaa 2341 cacaaggtca taaaagaaaa ggttcctcca agacctattc tgaaacagaa atgttctagc 2401 ctagagaaac taagactgaa agaagacaaa aaattgaaga gaaagatcca aaaaaaaaaa 2461 aaaaaaaaa //