LOCUS BC062987 1234 bp mRNA linear HUM 23-DEC-2003
DEFINITION Homo sapiens SH3 and multiple ankyrin repeat domains 3, mRNA (cDNA
clone IMAGE:5088692), partial cds.
ACCESSION BC062987
VERSION BC062987.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1234)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1234)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: f Column: 2.
FEATURES Location/Qualifiers
source 1..1234
/db_xref="H-InvDB:HIT000260697"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5088692"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1234
/gene="SHANK3"
/gene_synonym="KIAA1650"
/gene_synonym="PROSAP2"
/gene_synonym="PSAP2"
/gene_synonym="SPANK-2"
/db_xref="GeneID:85358"
/db_xref="MIM:606230"
CDS <1..1190
/gene="SHANK3"
/gene_synonym="KIAA1650"
/gene_synonym="PROSAP2"
/gene_synonym="PSAP2"
/gene_synonym="SPANK-2"
/codon_start=3
/product="SHANK3 protein"
/protein_id="AAH62987.1"
/db_xref="GeneID:85358"
/db_xref="MIM:606230"
/translation="ILSVLDTSLQRPAGLIVVHATSNGQEPSRLGGAEEERPGTPELA
PAPMQSAAVAEPLPSPRAQPPGGTPADAGPGQGSSEEEPELVFAVNLPPAQLSSSDEE
TREELARIGLVPPPEEFANGVLLATPLAGPGPSPTTVPSPASGKPSSEPPPAPESAAD
SGVEEADTRSSSDPHLETTSTISTVSSMSTLSSESGELTDTHTSFADGHTFLLEKPPV
PPKPKLKSPLGKGPVTFRDPLLKQSSDSELMAQQHHAASAGLASAAGPARPRYLFQRR
SKLWGDPVESRGLPGPEDDKPTVISELSSRLQQLNKDTRSLGEEPVGGLGSLLDPAKK
SPIAAARVSSASPPFVWSSIRGVSPPAPVLRPPDPDVVIRPTEIYVSYIIIIDNNYYN
IIM"
BASE COUNT 257 a 418 c 353 g 206 t
ORIGIN
1 tgatcctcag cgtcctggac acatccctgc agcggccagc tggcctcatc gttgtgcacg
61 ccaccagcaa cgggcaggag cccagcaggc tggggggggc cgaagaggag cgcccgggca
121 ccccggagtt ggccccggcc cccatgcagt cagcggctgt ggcagagccc ctgcccagcc
181 cccgggccca gccccctggt ggcaccccgg cagacgccgg gccaggccag ggcagctcag
241 aggaagagcc agagctggtg tttgctgtga acctgccacc tgcccagctg tcgtccagcg
301 atgaggagac cagggaggag ctggcccgaa ttgggttggt gccaccccct gaagagtttg
361 ccaacggggt cctgctggcc accccactcg ctggcccggg cccctcgccc accacggtgc
421 ccagcccggc ctcagggaag cccagcagtg agccaccccc tgcccctgag tctgcagccg
481 actctggggt ggaggaggct gacacacgca gctccagcga cccccacctg gagaccacaa
541 gcaccatctc cacggtgtcc agcatgtcca ccttgagctc ggagagcggg gaactcactg
601 acacccacac ctccttcgct gacggacaca cttttctact cgagaagcca ccagtgcctc
661 ccaagcccaa gctcaagtcc ccgctgggga aggggccggt gaccttcagg gacccgctgc
721 tgaagcagtc ctcggacagc gagctcatgg cccagcagca ccacgccgcc tctgccgggc
781 tggcctctgc cgccgggcct gcccgccctc gctacctctt ccagagaagg tccaagctat
841 ggggggaccc cgtggagagc cgggggctcc ctgggcctga agacgacaaa ccaactgtga
901 tcagtgagct cagctcccgc ctgcagcagc tgaacaagga cacgcgttcc ctgggggagg
961 aaccagttgg tggcctgggc agcctgctgg accctgccaa gaagtcgccc atcgcagcag
1021 ctcgggtcag ttccgcttca cctccttttg tatggagttc catccggggg gtttcacccc
1081 ctgctccagt cctgaggcct cctgaccctg acgttgtgat acgccccaca gagatctatg
1141 tttcttatat tattattatt gataataatt attataatat tattatgtaa taaatttata
1201 agaaatgaaa aaaaaaaaaa aaaaaaaaaa aaaa
//