LOCUS BC062984 2557 bp mRNA linear HUM 01-SEP-2006 DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C, mRNA (cDNA clone IMAGE:4561275), partial cds. ACCESSION BC062984 VERSION BC062984.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2557) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2557) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-DEC-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 50 Row: d Column: 16. FEATURES Location/Qualifiers source 1..2557 /db_xref="H-InvDB:HIT000260694" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4561275" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..2557 /gene="SEMA4C" /gene_synonym="FLJ20369" /gene_synonym="KIAA1739" /gene_synonym="M-Sema F" /gene_synonym="M-SEMA-F" /gene_synonym="Semacl1" /gene_synonym="Semaf" /db_xref="GeneID:54910" /db_xref="HGNC:HGNC:10731" /db_xref="MIM:604462" CDS <1..1634 /gene="SEMA4C" /gene_synonym="FLJ20369" /gene_synonym="KIAA1739" /gene_synonym="M-Sema F" /gene_synonym="M-SEMA-F" /gene_synonym="Semacl1" /gene_synonym="Semaf" /codon_start=3 /product="SEMA4C protein" /protein_id="AAH62984.1" /db_xref="GeneID:54910" /db_xref="HGNC:HGNC:10731" /db_xref="MIM:604462" /translation="QLYFNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAICEYQL EEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNILN FVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLK AVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCAD CVLARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSDTSGICNLRGSKKVRPTPKNIT VVAGTDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVMAAQPRHAGA YHCFSEEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLL VLSLRRRLREELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVGYYYSD GSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGED RGGLGHPLPELADELRRKLQQRQPLPDSNPEESSV" BASE COUNT 494 a 732 c 791 g 540 t ORIGIN 1 ggcagctcta cttcaaccag ctgcaggcga tgcacaccct gcaggacacc tcctggcaca 61 acaccacctt ctttggggtt tttcaagcac agtggggtga catgtacctg tcggccatct 121 gtgagtacca gttggaagag atccagcggg tgtttgaggg cccctataag gagtaccatg 181 aggaagccca gaagtgggac cgctacactg accctgtacc cagccctcgg cctggctcgt 241 gcattaacaa ctggcatcgg cgccacggct acaccagctc cctggagcta cccgacaaca 301 tcctcaactt cgtcaagaag cacccgctga tggaggagca ggtggggcct cggtggagcc 361 gccccctgct cgtgaagaag ggcaccaact tcacccacct ggtggccgac cgggttacag 421 gacttgatgg agccacctat acagtgctgt tcattggcac aggagacggc tggctgctca 481 aggctgtgag cctggggccc tgggttcacc tgattgagga gctgcagctg tttgaccagg 541 agcccatgag aagcctggtg ctatctcaga gcaagaagct gctctttgcc ggctcccgct 601 ctcagctggt gcagctgccc gtggccgact gcatgaagta tcgctcctgt gcagactgtg 661 tcctcgcccg ggacccctat tgcgcctgga gcgtcaacac cagccgctgt gtggccgtgg 721 gtggccactc tggatctcta ctgatccagc atgtgatgac ctcggacact tcaggcatct 781 gcaacctccg tggcagtaag aaagtcaggc ccactcccaa aaacatcacg gtggtggcgg 841 gcacagacct ggtgctgccc tgccacctct cctccaactt ggcccatgcc cgctggacct 901 ttgggggccg ggacctgcct gcggaacagc ccgggtcctt cctctacgat gcccggctcc 961 aggccctggt tgtgatggct gcccagcccc gccatgccgg ggcctaccac tgcttttcag 1021 aggagcaggg ggcgcggctg gctgctgaag gctaccttgt ggctgtcgtg gcaggcccgt 1081 cggtgacctt ggaggcccgg gcccccctgg aaaacctggg gctggtgtgg ctggcggtgg 1141 tggccctggg ggctgtgtgc ctggtgctgc tgctgctggt gctgtcattg cgccggcggc 1201 tgcgggaaga gctggagaaa ggggccaagg ctactgagag gaccttggtg taccccctgg 1261 agctgcccaa ggagcccacc agtcccccct tccggccctg tcctgaacca gatgagaaac 1321 tttgggatcc tgtcggttac tactattcag atggctccct taagatagta cctgggcatg 1381 cccggtgcca gcccggtggg gggccccctt cgccacctcc aggcatccca ggccagcctc 1441 tgccttctcc aactcggctt cacctggggg gtgggcggaa ctcaaatgcc aatggttacg 1501 tgcgcttaca actaggaggg gaggaccggg gagggctcgg gcaccccctg cctgagctcg 1561 cggatgaact gagacgcaaa ctgcagcaac gccagccact gcccgactcc aaccccgagg 1621 agtcatcagt atgaggggaa cccccaccgc gtcggcggga agcgtgggag gtgtagctcc 1681 tacttttgca caggcaccag ctacctcagg gacatggcac gggcacctgc tctgtctggg 1741 acagatactg cccagcaccc acccggccat gaggacctgc tctgctcagc acgggcactg 1801 ccacttggtg tggctcacca gggcaccagc ctcgcagaag gcatcttcct cctctctgtg 1861 aatcacagac acgcgggacc ccagccgcca aaacttttca aggcagaagt ttcaagatgt 1921 gtgtttgtct gtatttgcac atgtgtttgt gtgtgtgtgt atgtgtgtgt gcacgcgcgt 1981 gcgcgcttgt ggcatagcct tcctgtttct gtcaagtctt cccttggcct gggtcctcct 2041 ggtgagtcat tggagctatg aaggggaagg ggtcgtatca ctttgtctct cctaccccca 2101 ctgccccgag tgtcgggcag cgatgtacat atggaggtgg ggtggacagg gtgctgtgcc 2161 ccttcagagg gagtgcaggg cttggggtgg gcctagtcct gctcctaggg ctgtgaatgt 2221 tttcagggtg gggggaggga gatggagcct cctgtgtgtt tggggggaag ggtgggtggg 2281 gcctcccact tggccccggg gttcagtggt attttatact tgccttcttc ctgtacaggg 2341 ctgggaaagg ctgtgtgagg ggagagaagg gagagggtgg gcctgctgtg gacaatggca 2401 tactctcttc cagccctagg aggagggctc ctaacagtgt aacttattgt gtccccgcgt 2461 atttatttgt tgtaaatatt tgagtatttt tatattgaca aataaaatgg agaaaatgaa 2521 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa //