LOCUS BC062779 1207 bp mRNA linear HUM 03-JAN-2005 DEFINITION Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 3, mRNA (cDNA clone IMAGE:4688383), complete cds. ACCESSION BC062779 VERSION BC062779.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1207) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1207) AUTHORS Director MGC Project. TITLE Direct Submission JOURNAL Submitted (25-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CLONTECH cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield, Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin, Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu, Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 51 Row: i Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1207 /db_xref="H-InvDB:HIT000260670" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4688383" /tissue_type="Lung" /clone_lib="NIH_MGC_77" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1207 /gene="ABCA3" /gene_synonym="ABC-C" /gene_synonym="ABC3" /gene_synonym="EST111653" /gene_synonym="LBM180" /db_xref="GeneID:21" /db_xref="MIM:601615" CDS 385..1014 /gene="ABCA3" /gene_synonym="ABC-C" /gene_synonym="ABC3" /gene_synonym="EST111653" /gene_synonym="LBM180" /codon_start=1 /product="ABCA3 protein" /protein_id="AAH62779.1" /db_xref="GeneID:21" /db_xref="MIM:601615" /translation="MAVLRQLALLLWKNYTLQKRKVLVTVLELFLPLLFSGILIWLRL KIQSENVPNATIYPGQSIQELPLFFTFPPPGDTWELAYIPSHSDAAKTVTETVRRALV INMRVRGFPSEKDFEDYIRYDNCSSSVLAAVVFEHPFNHSKEPLPLAVKYHLRFSYTR RNYMWTQTGSFFLKETEGWHTTSLFPLFPNPGPREPTSPDGGEPGEKLG" BASE COUNT 279 a 354 c 298 g 276 t ORIGIN 1 ggggagtagt cctgaaggga gacctgctgt gtggagcctc ttctgggacc cagccatgag 61 tgtggagctg agcaactgaa cctgaaactc ttccactgtg agtcaaggag gcttttccgc 121 acatgaagga cgctgagcgg gaaggactcc tctctgcctg cagttgtagc gagtggacca 181 gcaccagggg ctctctagac tgcccctcct ccatcgcctt ccctgcctct ccaggacaga 241 gcagccacgt ctgcacacct cgccctcttt acactcagtt ttcagagcac gtttctccta 301 tttcctgcgg gttgcagcgc ctacttgaac ttactcagac cacctacttc tctagcagca 361 ctgggcgtcc ctttcagcaa gacgatggct gtgctcaggc agctggcgct cctcctctgg 421 aagaactaca ccctgcagaa gcggaaggtc ctggtgacgg tcctggaact cttcctgcca 481 ttgctgtttt ctgggatcct catctggctc cgcttgaaga ttcagtcgga aaatgtgccc 541 aacgccacca tctacccggg ccagtccatc caggagctgc ctctgttctt caccttccct 601 ccgccaggag acacctggga gcttgcctac atcccttctc acagtgacgc tgccaagacc 661 gtcactgaga cagtgcgcag ggcacttgtg atcaacatgc gagtgcgcgg ctttccctcc 721 gagaaggact ttgaggacta cattaggtac gacaactgct cgtccagcgt gctggccgcc 781 gtggtcttcg agcacccctt caaccacagc aaggagcccc tgccgctggc ggtgaaatat 841 cacctacggt tcagttacac acggagaaat tacatgtgga cccaaacagg ctcctttttc 901 ctgaaagaga cagaaggctg gcacactact tcccttttcc cgcttttccc aaacccagga 961 ccaagggaac ctacatcccc tgatggcgga gaacctggtg agaagctcgg ttagggttcg 1021 tgttaccagc ccgggctgtt gactagtgac agtcatatgg gggcagcccc actttgcaaa 1081 agtatttctt gaagaaatac ttttcaggac atttggcttg gttccaagtc tttgctgttg 1141 tgaatagtgc cgcaataaac atacgtgtgc atgtgacaaa aaaaaaaaaa aaaaaaaaaa 1201 aaaaaaa //