LOCUS BC062682 544 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens dermcidin, mRNA (cDNA clone MGC:71930 IMAGE:30369929),
complete cds.
ACCESSION BC062682
VERSION BC062682.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 544)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 544)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Michael Brownstein and Dr. Miklos Palkovits
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 51 Row: b Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16751920.
FEATURES Location/Qualifiers
source 1..544
/db_xref="H-InvDB:HIT000260573"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71930 IMAGE:30369929"
/tissue_type="Skin and meninges pool- skin, dura matter,
pia matter, choroid plexus."
/clone_lib="NIH_MGC_186"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..544
/gene="DCD"
/gene_synonym="AIDD"
/gene_synonym="DCD-1"
/gene_synonym="DSEP"
/gene_synonym="HCAP"
/gene_synonym="PIF"
/db_xref="GeneID:117159"
/db_xref="HGNC:HGNC:14669"
/db_xref="MIM:606634"
CDS 63..395
/gene="DCD"
/gene_synonym="AIDD"
/gene_synonym="DCD-1"
/gene_synonym="DSEP"
/gene_synonym="HCAP"
/gene_synonym="PIF"
/codon_start=1
/product="dermcidin"
/protein_id="AAH62682.1"
/db_xref="GeneID:117159"
/db_xref="HGNC:HGNC:14669"
/db_xref="MIM:606634"
/translation="MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKEN
AGEDPGLARQAPKPRKQRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDV
KDVLDSVL"
BASE COUNT 204 a 122 c 130 g 88 t
ORIGIN
1 gggaccctag atcccaagat ctccaaggat tcggtggcat acccactcca gcacacagaa
61 gcatgaggtt catgactctc ctcttcctga cagctctggc aggagccctg gtctgtgcct
121 atgatccaga ggccgcctct gccccaggat cggggaaccc ttgccatgaa gcatcagcag
181 ctcaaaagga aaatgcaggt gaagacccag ggttagccag acaggcacca aagccaagga
241 agcagagatc cagccttctg gaaaaaggcc tagacggagc aaaaaaagct gtggggggac
301 tcggaaaact aggaaaagat gcagtcgaag atctagaaag cgtgggtaaa ggagccgtcc
361 atgacgttaa agacgtcctt gactcagtac tatagctgta aggagaagct gagaaatgat
421 acccaggagc agcaggcttt acgtcttcag cctaaaacct aaaaaaaaaa aaaaaaaaaa
481 aatttaaaac agctattaaa ctgaaagcat ctggaaaaaa aaaaaaaaaa aaaaaaaaaa
541 aaaa
//