LOCUS BC062543 2072 bp mRNA linear HUM 11-APR-2007
DEFINITION Homo sapiens CAP-GLY domain containing linker protein 1, mRNA (cDNA
clone IMAGE:5921093), partial cds.
ACCESSION BC062543
VERSION BC062543.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2072)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2072)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: j Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38016917.
FEATURES Location/Qualifiers
source 1..2072
/db_xref="H-InvDB:HIT000260456"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5921093"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_99"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..>2072
/gene="CLIP1"
/gene_synonym="CLIP"
/gene_synonym="CLIP-170"
/gene_synonym="CLIP170"
/gene_synonym="CYLN1"
/db_xref="GeneID:6249"
/db_xref="HGNC:HGNC:10461"
/db_xref="MIM:179838"
CDS 112..>2072
/gene="CLIP1"
/gene_synonym="CLIP"
/gene_synonym="CLIP-170"
/gene_synonym="CLIP170"
/gene_synonym="CYLN1"
/codon_start=1
/product="CLIP1 protein"
/protein_id="AAH62543.1"
/db_xref="GeneID:6249"
/db_xref="HGNC:HGNC:10461"
/db_xref="MIM:179838"
/translation="MSMLKPSGLKAPTKILKPGSTALKTPTAVVAPVEKTISSEKASS
TPSSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGS
VAGVRYFQCEPLKGIFTRPSKLTRKVQAEDEANGLQTTPASRATSPLCTSTASMVSSS
PSTPSNIPQKPSQPAAKEPSATPPISNLTKTASESISNLSEAGSIKKGERELKIGDRV
LVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVH
KVTKIGFPSTTPAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTG
LLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQEL
ALARDGHDQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESI
TKGDLETQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDL
ALRVQEVAELRRRLESNKPAGDVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHF
GAREETHQKEIKALYTATEKLSKENESLKSKLEHANKENSDVIALWKSKLETAIASHQ
QAMEELKVSFSKGLGTETAEFAELKKKKK"
BASE COUNT 623 a 484 c 559 g 406 t
ORIGIN
1 aggagattta atccagagac tgacttcact atagaaccca cagttgtatc aatggttggg
61 gaaagatagt ggcaacaggc agaggagaaa cagctctgac atacaaagaa aatgagtatg
121 ctaaagccaa gtgggcttaa ggcccccacc aagatcctga agcctggaag cacagctctg
181 aagacaccta cggctgttgt agctccagta gaaaaaacca tatccagtga aaaagcatca
241 agcactccat catctgagac tcaggaggaa tttgtggatg actttcgagt tggggagcga
301 gtttgggtga atggaaataa gcctggattt atccagtttc ttggagaaac ccagtttgca
361 ccaggccagt gggctggaat tgttttagat gaacccatag gcaagaacga tggttcggtg
421 gcaggagttc ggtatttcca gtgtgaacct ttaaagggca tatttacccg accttcaaag
481 ttaacaagga aggtgcaagc agaagatgaa gctaatggcc tgcagacaac gcccgcctcc
541 cgagctactt caccgctgtg cacttctacg gccagcatgg tgtcttcctc cccctccacc
601 ccttcaaaca tccctcagaa accatcacag ccagcagcaa aggaaccttc agctacgcct
661 ccgatcagca accttacaaa aactgccagt gaatctatct ccaacctttc agaggctggc
721 tcaatcaaga aaggagaaag agagctcaaa atcggagaca gagtattggt tggtggcact
781 aaggctggtg tagtccggtt tcttggggag accgactttg ccaaggggga gtggtgtggc
841 gtggagttag atgagccact tgggaagaat gatggcgctg ttgctggaac aaggtatttt
901 cagtgtcaac ccaaatatgg cttgttcgct cctgtccaca aagttaccaa gattggcttc
961 ccttccacta caccagccaa agccaaggcc aacgcagtga ggcgagtgat ggcgaccacg
1021 tccgccagcc tgaagcgcag cccttctgcc tcttccctca gctccatgag ctcagtggcc
1081 tcctctgtga gcagcaggcc cagtcggaca ggactattga ctgaaacctc ctcccgttac
1141 gccaggaaga tctccggtac cactgccctc caggaggccc tgaaggagaa gcagcagcac
1201 attgagcagc tgctggcgga acgggatctg gagagggcgg aggtggccaa ggccacgagc
1261 cacgtggggg agatagagca ggagctagct ctggcccggg acggacatga ccagcatgtc
1321 ctggaattgg aagccaaaat ggaccagctg cgaacaatgg tggaagctgc tgacagggag
1381 aaggtggagc ttctcaacca gcttgaagag gagaaaagga aggttgagga ccttcagttc
1441 cgggttgaag aagaatcaat taccaaaggt gatcttgaga cgcagaccaa actggagcat
1501 gcccgcatta aggagcttga acagagcctg ctctttgaaa agaccaaagc tgacaaactc
1561 cagagggagt tagaagacac tagggtggct acagtttcag aaaagtcacg tataatggaa
1621 ctggagaaag acctagcatt gagagtacag gaagtagctg agctccgaag aaggctagag
1681 tccaataagc ctgctgggga tgtggacatg tcactttccc ttttgcaaga gataagctct
1741 ttgcaagaaa agttagaagt cacccgtact gaccaccaga gagaaataac ttctctgaag
1801 gagcattttg gagcccggga agaaactcat cagaaggaga taaaggctct gtataccgcc
1861 acggaaaagc tttccaaaga gaacgagtca ttgaaaagca agctggagca tgccaacaaa
1921 gagaactcag atgtgatagc tctatggaag tccaaactgg agactgccat cgcatcccac
1981 cagcaggcga tggaagaact gaaggtatct ttcagcaaag ggcttggaac agagacggca
2041 gaatttgctg aactaaaaaa aaaaaaaaaa aa
//