LOCUS BC062465 1653 bp mRNA linear HUM 24-JAN-2005 DEFINITION Homo sapiens plexin D1, mRNA (cDNA clone IMAGE:6178111), complete cds. ACCESSION BC062465 VERSION BC062465.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1653) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1653) AUTHORS Director MGC Project. TITLE Direct Submission JOURNAL Submitted (17-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. James R. Lupski cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield, Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin, Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu, Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 141 Row: b Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1653 /db_xref="H-InvDB:HIT000260428" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6178111" /tissue_type="Peripheral Nervous System, dorsal root ganglion" /clone_lib="Lupski_dorsal_root_ganglion" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1653 /gene="PLXND1" /gene_synonym="KIAA0620" /gene_synonym="PLEXD1" /db_xref="GeneID:23129" /db_xref="MIM:604282" CDS 377..535 /gene="PLXND1" /gene_synonym="KIAA0620" /gene_synonym="PLEXD1" /codon_start=1 /product="PLXND1 protein" /protein_id="AAH62465.1" /db_xref="GeneID:23129" /db_xref="MIM:604282" /translation="MAEIYKYAKRYRPQIMAALEANPTARRTQLQHKFEQVVALMEDN IYECYSEA" BASE COUNT 360 a 448 c 514 g 331 t ORIGIN 1 cgggggtcgg gggctgggcc tcaatgcctc cactggagta agggcaggga gcgcagaggg 61 catttcagaa gtggctgtgg cctcttgctg gcctgcaaat tcgtcatgca ttttcccaga 121 gtttgaggag cgggggcagg agagcaccct ctggatggag aggagattgg acttcagggt 181 ccgggaagcc gtcttcgtcc atgggacttg aggggcctca tcgctgaact gttctgtggg 241 ggccgtgggg agttggggat tgtgtgcaag cagctggctt tgctgggact aggctcagct 301 ttgaccgctg ggctaacctc ctccccatcc tgcctcctta tagaaatacc agaatgagtt 361 caacaccaat gtggccatgg cagagattta taagtacgcc aagaggtatc ggccgcagat 421 catggccgcg ctggaggcca accccacggc ccggaggaca caactgcagc acaagtttga 481 gcaggtggtg gctttgatgg aggacaacat ctacgagtgc tacagtgagg cctgagacac 541 atggagagtt ggtcaggctg ctgctgggag aaatggacgc ccactgggcc tcaacttgat 601 cttctacccc gtgcctgtga ctcagactgg gaaatactga gcagagacgg ctggggcggg 661 ggcaggagga ggggctgctc tctgagacag gggcgccccc gccttgaccc ctgggcacct 721 ccatcccctc ccacctgtcc ccagatcagt ctctgggatg gaggccagag agctggtcag 781 gctcccccat ctgcccagca cggcctgcac tgtgcccacc cacttgctcc acaacgtcca 841 gttggtcctg ctgccaagag ccccgtgcat ccaggcggcc aagcacaaac tgggggagag 901 gaggccgcca gcccggaggc tgcagcccag aaactctacc tcatccacac tggtgcaggg 961 agccctcctt gaactgacct ttgattggtt tctgcttcaa ctaccaaaat gttatctcca 1021 cttccccctc acccgtagag gatcctggcc acagacagtt tcaagtagtg tcagattttt 1081 gttgcttggg cggctgttgg tagagtgggc agtgcccgcg ccatggggtg ctctgtgggc 1141 ttctccagga gcagggaggg tggaggggag ggatgggggg cacaggagct gggagccccg 1201 tctccaggaa aaggagaggg gttaagatgc accgaggctg tagctgggct acttgatctt 1261 gctgaaagtg tttctaaaga tagcaccact ttttttttta aagcttttat atattaaaaa 1321 acgtatcatg caccaactgt gaatagctgc cgcttgcgca gaggacccgg ggaggggtcc 1381 cgagaggctc cccatgcaac actggaaatg actgttccag agagcgggca gacctggcag 1441 agcgcccctg gcgcctgaga ctaccaccca ctccgttcct gccagaaacg accctctgtg 1501 gccgatgggc catgcgggcc cctcgcagcc aactcagcca gtgttgggac tggctcagag 1561 cccatggggg ctggaggggg gcagctggga ctctggaatc ttctttataa taaaagcctt 1621 acggacaaac ctaaaaaaaa aaaaaaaaaa aaa //