LOCUS BC062465 1653 bp mRNA linear HUM 24-JAN-2005
DEFINITION Homo sapiens plexin D1, mRNA (cDNA clone IMAGE:6178111), complete
cds.
ACCESSION BC062465
VERSION BC062465.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1653)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1653)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: b Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1653
/db_xref="H-InvDB:HIT000260428"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6178111"
/tissue_type="Peripheral Nervous System, dorsal root
ganglion"
/clone_lib="Lupski_dorsal_root_ganglion"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1653
/gene="PLXND1"
/gene_synonym="KIAA0620"
/gene_synonym="PLEXD1"
/db_xref="GeneID:23129"
/db_xref="MIM:604282"
CDS 377..535
/gene="PLXND1"
/gene_synonym="KIAA0620"
/gene_synonym="PLEXD1"
/codon_start=1
/product="PLXND1 protein"
/protein_id="AAH62465.1"
/db_xref="GeneID:23129"
/db_xref="MIM:604282"
/translation="MAEIYKYAKRYRPQIMAALEANPTARRTQLQHKFEQVVALMEDN
IYECYSEA"
BASE COUNT 360 a 448 c 514 g 331 t
ORIGIN
1 cgggggtcgg gggctgggcc tcaatgcctc cactggagta agggcaggga gcgcagaggg
61 catttcagaa gtggctgtgg cctcttgctg gcctgcaaat tcgtcatgca ttttcccaga
121 gtttgaggag cgggggcagg agagcaccct ctggatggag aggagattgg acttcagggt
181 ccgggaagcc gtcttcgtcc atgggacttg aggggcctca tcgctgaact gttctgtggg
241 ggccgtgggg agttggggat tgtgtgcaag cagctggctt tgctgggact aggctcagct
301 ttgaccgctg ggctaacctc ctccccatcc tgcctcctta tagaaatacc agaatgagtt
361 caacaccaat gtggccatgg cagagattta taagtacgcc aagaggtatc ggccgcagat
421 catggccgcg ctggaggcca accccacggc ccggaggaca caactgcagc acaagtttga
481 gcaggtggtg gctttgatgg aggacaacat ctacgagtgc tacagtgagg cctgagacac
541 atggagagtt ggtcaggctg ctgctgggag aaatggacgc ccactgggcc tcaacttgat
601 cttctacccc gtgcctgtga ctcagactgg gaaatactga gcagagacgg ctggggcggg
661 ggcaggagga ggggctgctc tctgagacag gggcgccccc gccttgaccc ctgggcacct
721 ccatcccctc ccacctgtcc ccagatcagt ctctgggatg gaggccagag agctggtcag
781 gctcccccat ctgcccagca cggcctgcac tgtgcccacc cacttgctcc acaacgtcca
841 gttggtcctg ctgccaagag ccccgtgcat ccaggcggcc aagcacaaac tgggggagag
901 gaggccgcca gcccggaggc tgcagcccag aaactctacc tcatccacac tggtgcaggg
961 agccctcctt gaactgacct ttgattggtt tctgcttcaa ctaccaaaat gttatctcca
1021 cttccccctc acccgtagag gatcctggcc acagacagtt tcaagtagtg tcagattttt
1081 gttgcttggg cggctgttgg tagagtgggc agtgcccgcg ccatggggtg ctctgtgggc
1141 ttctccagga gcagggaggg tggaggggag ggatgggggg cacaggagct gggagccccg
1201 tctccaggaa aaggagaggg gttaagatgc accgaggctg tagctgggct acttgatctt
1261 gctgaaagtg tttctaaaga tagcaccact ttttttttta aagcttttat atattaaaaa
1321 acgtatcatg caccaactgt gaatagctgc cgcttgcgca gaggacccgg ggaggggtcc
1381 cgagaggctc cccatgcaac actggaaatg actgttccag agagcgggca gacctggcag
1441 agcgcccctg gcgcctgaga ctaccaccca ctccgttcct gccagaaacg accctctgtg
1501 gccgatgggc catgcgggcc cctcgcagcc aactcagcca gtgttgggac tggctcagag
1561 cccatggggg ctggaggggg gcagctggga ctctggaatc ttctttataa taaaagcctt
1621 acggacaaac ctaaaaaaaa aaaaaaaaaa aaa
//