LOCUS BC062413 1309 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens HMG box domain containing 4, mRNA (cDNA clone
IMAGE:6202719), partial cds.
ACCESSION BC062413
VERSION BC062413.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1309)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1309)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: g Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51173872.
FEATURES Location/Qualifiers
source 1..1309
/db_xref="H-InvDB:HIT000260376"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6202719"
/tissue_type="Peripheral Nervous System, sciatic nerve"
/clone_lib="Lupski_sciatic_nerve"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>1309
/gene="HMGXB4"
/gene_synonym="HMGBCG"
/gene_synonym="THC211630"
/db_xref="GeneID:10042"
/db_xref="HGNC:HGNC:5003"
/db_xref="MIM:604702"
CDS 127..>1309
/gene="HMGXB4"
/gene_synonym="HMGBCG"
/gene_synonym="THC211630"
/codon_start=1
/product="HMGXB4 protein"
/protein_id="AAH62413.1"
/db_xref="GeneID:10042"
/db_xref="HGNC:HGNC:5003"
/db_xref="MIM:604702"
/translation="MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREE
EEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSS
PQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELP
LEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQA
TVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAE
SHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKH
KEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKK
KK"
BASE COUNT 417 a 300 c 331 g 261 t
ORIGIN
1 cccacgcgtc cgcggcgatc ggcggcgttg aggcgggatc cgggcgagcc gagtgaagac
61 ctggtcctgt agacgggaag gagcctggac acagtgacac attctcaaag gccctgcagg
121 accaccatgg cttatgatga ctccgtgaag aaagaagatt gttttgatgg tgatcatacc
181 tttgaggaca taggacttgc agctggccga agccaacgag agaaaaaacg ttcttacaaa
241 gattttttaa gggaagagga agaaattgct gctcaggtca ggaattcttc caagaagaag
301 ttgaaggata gtgaacttta cttcttgggg acggacacac acaagaagaa gaggaagcac
361 tcctctgatg attactacta tggagatatt tcgtctttgg aatcgtcaca gaagaaaaag
421 aaaaagtcca gcccacagtc tactgataca gctatggacc tgttgaaagc tatcacttcc
481 ccactggcag caggctccaa gccctccaaa aagactgggg agaaatcctc tggctcttca
541 agccattcgg agagtaaaaa ggagcaccac aggaagaaag tcagtggaag cagtggggaa
601 ctacccctag aggatggtgg ctcccacaaa tcgaaaaaaa tgaaacctct ctatgtgaac
661 acagagacac tgacccttcg ggagcctgat ggtttaaaaa tgaaacttat tctgtcacca
721 aaggagaagg gaagcagctc tgttgatgag gagtcttttc aatatccctc ccaacaagcg
781 actgtgaaaa aatcctcaaa gaaatcagct cgggatgagc agggtgcttt actcctagga
841 catgagttac agagcttttt gaaaacagcc cggaaaaagc acaagtcatc ctcagacgca
901 cattcatctc ctggccctga aggctgtggg tctgacgcct cccagttcgc agagtcccac
961 agtgctaacc ttgatctttc agggcttgaa cctattctgg tagaatcaga ctcatcctct
1021 ggtggggaac tagaggctgg ggagttagtg atagatgatt cttaccgaga aatcaagaag
1081 aaaaagaagt caaagaagag caaaaagaag aaagacaagg agaagcataa agagaagcga
1141 cactccaagt ccaagagaag tttaggactt tctgccgtgc cagtgggaga ggtcacagtg
1201 acatctggcc ctcctcccag catcccatac gctggagcag cagcacctcc cctgccactt
1261 cctggcctcc acacagatgg gcatagtgaa aaaaaaaaaa aaaaaaaaa
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