LOCUS BC062354 1699 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens mannosyl (alpha-1,6-)-glycoprotein
beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B, mRNA (cDNA
clone IMAGE:4643626), complete cds.
ACCESSION BC062354
VERSION BC062354.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1699)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1699)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: d Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39812180
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1699
/db_xref="H-InvDB:HIT000260354"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4643626"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1699
/gene="MGAT5B"
/gene_synonym="FLJ25132"
/gene_synonym="GnT-IX"
/gene_synonym="GnT-VB"
/gene_synonym="KIAA2008"
/db_xref="GeneID:146664"
/db_xref="HGNC:HGNC:24140"
CDS 207..1391
/gene="MGAT5B"
/gene_synonym="FLJ25132"
/gene_synonym="GnT-IX"
/gene_synonym="GnT-VB"
/gene_synonym="KIAA2008"
/codon_start=1
/product="MGAT5B protein"
/protein_id="AAH62354.1"
/db_xref="GeneID:146664"
/db_xref="HGNC:HGNC:24140"
/translation="MITVNPDGKIMVRRCLVTLRPFRLFVLGIGFFTLCFLMTSLGGQ
FSARRLGDSPFTIRTEVMGGPESRGVLRKMSDLLELMVKRMDALARLENSSELHRAGG
DLHFPADRMPPGAGLMERIQAIAQNVSDIAVKVDQILRHSLLLHSKVSEGRRDQCEAP
SDPKFPDCSGKVEWMRARWTSDPCYAFFGVDGTECSFLIYLSEVEWFCPPLPWRNQTA
AQRAPKPLPKVQAVFRSNLSHLLDLMGSGKESLIFMKKRTKRLTAQWALAAQRLAQKL
GATQRDQKQILVHIGFLTEESGDVFSPRVLKGGPLGEMVQWADILTALYVLGHGLRVT
VSLKELQRQRRLRSSQEQARCGVMGACEKMLLEGDVASNTLLIEKPSKKETEKCPKNL
VT"
BASE COUNT 373 a 501 c 531 g 294 t
ORIGIN
1 cgccctcgcc gccctccggc agccgcgccg ctccctccgc tgcacgccca ggcctgagca
61 gcgaggccac cgggccgcgc gctcccagct tcgctcggac gcggcttcgg cccgcagagg
121 gttcgtggcc cggacgcggc gagagctggg cccaggacgg tgcgtccggc ctcgcccgcg
181 gctgctcgca ccaacaagtt tgaacaatga tcaccgtcaa ccccgatggg aagataatgg
241 tcagaagatg cctggtcacc ctgagaccct ttcggctttt tgtcctgggc atcggcttct
301 tcactctctg cttcctgatg acgtctctgg gaggccagtt ctcggcccgg cgcctggggg
361 actcgccatt caccatccgc acagaagtga tggggggccc cgagtcccgc ggcgtcctgc
421 gcaagatgag cgacctgctg gagctgatgg tgaagcgcat ggacgcactg gccaggctgg
481 agaacagcag tgagctgcac cgggccggcg gcgacctgca ctttcccgca gacaggatgc
541 cccctggggc cggcctcatg gagcggatcc aggctattgc ccagaacgtc tccgacatcg
601 ctgtgaaggt ggaccagatc ctgcgccaca gtctgctcct gcacagcaag gtgtcagaag
661 gccggcggga ccagtgtgag gcacccagtg accccaagtt ccctgactgc tcagggaagg
721 tggagtggat gcgtgcccgc tggacctctg acccctgcta cgccttcttt ggggtggacg
781 gcaccgagtg ctccttcctc atctacctca gtgaggtcga gtggttctgc cccccgctgc
841 cctggaggaa ccagacggct gcccagaggg cacccaagcc cctccccaaa gtccaggcag
901 ttttccgaag caacctgtcc caccttctgg acctgatggg cagcgggaag gagtccctga
961 tcttcatgaa gaagcggacc aagaggctca cagcccagtg ggcgctggct gcccagcgcc
1021 tggcacagaa gctgggggcc acccagaggg accagaagca gatcctggtc cacatcggct
1081 tcctgacgga ggagtccggg gacgtgttca gccctcgggt cctgaagggc gggcccctag
1141 gggagatggt gcagtgggcg gacattctga ctgcactcta tgtcctgggc catggcctgc
1201 gggtcacagt ctccctgaag gagctgcaga ggcaaaggag actgaggagt agccaagagc
1261 aagccagatg tggagtcatg ggtgcctgtg agaagatgct tctagaagga gatgtggcca
1321 gcaacacatt gctcattgaa aagccaagta agaaggagac tgaaaaatgt ccaaagaatt
1381 tggtcacatg aggctgggtg gggcggctca ctcctgtaat cccagcactt tgggaggtca
1441 cggcgggagg attgcttgat tccaggagtt ggagaccagc ctgggcaaga tagtgagacc
1501 tggtctttac caaaaacaaa aaaattagcc aagtgcgcct gtggtcccag ctactcaggc
1561 gactgaggaa ggaggatcac ttgagcctgg gaagtcgagg ctacagtcag ccgtgatcat
1621 gctactgcac tctagcttgg gtgacaaagc aagactgtct caaaaaaaaa aaaaaaaaaa
1681 aaaaaaaaaa aaaaaaaaa
//