LOCUS BC062344 2330 bp mRNA linear HUM 23-JUN-2005 DEFINITION Homo sapiens patched domain containing 1, mRNA (cDNA clone IMAGE:6579014), complete cds. ACCESSION BC062344 VERSION BC062344.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2330) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2330) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (17-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 50 Row: o Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 27735090 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..2330 /db_xref="H-InvDB:HIT000260344" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6579014" /tissue_type="Ovary, teratocarcinoma" /clone_lib="NIH_MGC_109" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2330 /gene="PTCHD1" /gene_synonym="FLJ30296" /db_xref="GeneID:139411" CDS 410..1180 /gene="PTCHD1" /gene_synonym="FLJ30296" /codon_start=1 /product="PTCHD1 protein" /protein_id="AAH62344.1" /db_xref="GeneID:139411" /translation="MLDQHHTDLILKLHAAVTKIQVPRPGFNYTFAHICILNNDKTCI VDDIVHVLEELKNARATNRTNFAITYPITHLKDGRAVYNGHQLGGVTVHSKDRVKSAE AIQLTYYLQSINSLNDMVAERWESSFCDTVRLFQKSNSKVKMYPYTSSSLREDFQKTS RVSERYLVTSLILVVTMAILCCSMQDCVRSKPWLGLLGLVTISLATLTAAGIINLTGG KYNSTFLGVPFVMLGNYYSSFFCFRLLVVLTRFLKGQE" BASE COUNT 597 a 598 c 564 g 571 t ORIGIN 1 atttggaagg aggcgtgatt tccacgttcg agcgtcttcg ctccccaccc cctctcggca 61 ccagccagtg cgcgccacca cctgagcctg gcgagagccg ggacgcacgc agtcttcagc 121 ctgctccttt aagcctctgg agagactcgg ctctgagcgg gtccgcccga cacccgcccc 181 ctccccccac tcctgagaac tctttacttt ttgtttggaa aatcggggcc atttctttat 241 ttatctctgg gtcttcccgg aggagggcag agaaggggag agcaagatcg agcgcaacct 301 cgttaacagc ctcttcccgg tcaaccgctc caagcaccgt ctctactcgg acctgcagac 361 ccccgggcgc tacggccggg tcatcgtcac ctccttccag aaagccaaca tgctggacca 421 gcatcacacc gacctgatct taaagttgca tgctgctgtc accaagatcc aggttccaag 481 gcctggtttt aattacacgt ttgcccatat atgtatcctg aataatgata agacttgcat 541 cgtggatgac atagtgcacg tcctggaaga gctaaagaat gctcgggcca ccaatcggac 601 caattttgct atcacatacc caatcactca cttaaaggac gggagggctg tgtacaatgg 661 gcaccagctt gggggcgtca ctgtgcacag caaagaccgg gtgaaatctg cagaggccat 721 ccagctcacc tactacctgc agtcaatcaa cagtctcaat gacatggtgg ctgagaggtg 781 ggagtccagc ttctgcgaca ctgtcagact gtttcagaaa tccaacagca aagtcaaaat 841 gtacccttac acgtcctcct cactgaggga agatttccag aagaccagcc gcgtatcaga 901 acgttacctg gtcaccagcc tgattctggt ggttaccatg gccatcctgt gttgctctat 961 gcaggactgc gtccgcagca aaccctggct aggcctgctc ggattggtga ccataagcct 1021 ggccactctc actgcagccg ggatcatcaa tcttactggt gggaaatata attccacctt 1081 cctgggagtc cctttcgtca tgctaggtaa ttactactct tctttcttct gtttccgcct 1141 gctggtggtg ttgactaggt tcctaaaagg ccaggagtag ccttctaaca actttgtttc 1201 atttaacagt atcttcattt tgcccaaaag tcctgggacc cactctataa agtgctggta 1261 atcagcaaaa aacaacctaa tctggtaaat gtgccagaag ttcaaagtcc tgggttctag 1321 cgctgactct ccattgagca gccatgtggt gtctagcagg tattaatctt ctccttgtcc 1381 cagtgtctta ggttgggctt ccccataagc agggccctga gaaaaagatt tggatacaag 1441 tagtgtattt gggaggtgag cccaggaagc accagtatgg gagtgaggaa gtggaagttg 1501 aaggcacttc agttgaaggc aggcagttga aggtatgtta atgagcccaa gatatatcac 1561 attctgccgg ttgctgtggg cacctgtggt tcagccccac aggggacctt tgggagacct 1621 tgtgaaacac acctcagaga ggtcctcccc cggggtgagg aatttgggct attttcccac 1681 agaccctttg tgattcattg agggctgctc cccaggccag ttaactgcca gcacttccca 1741 gggaggtgct cctgcagcac actcctgcag ccagagaaat ccttcaggtg actttgtagt 1801 tataagcctt cagcaagctc aagaatgggg aatgggaggg catgttgggt tggcactgag 1861 agcgcctgct actctcagtt tccccacctt atgaatagag tggatgtgag catcacacaa 1921 aaggacatga taaatgtata agaactttga aagtgacatg tgagatacca gtaggaagta 1981 actttttttc ctattcttac tatgaactca ggagaatatt ttaaagcgat gctgatggtg 2041 acagcgtgct tccagtgtgt ccactcaggg ggctgctgga actccctgat agagattaat 2101 ggtcaaaaca aagccatagt ggccataaca tcggttgccc tgtccatctg ttatcgaaaa 2161 tggcatgccc agcaagcctg atggcagggt tcttgcgggc caaggattca agaggttcac 2221 tttccccctt ttctatggta gcttctcatc aattccttta acaaaattaa aatgtcattt 2281 ggaatcagaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa //