LOCUS BC062339 2992 bp mRNA linear HUM 21-JUL-2006 DEFINITION Homo sapiens alkB, alkylation repair homolog 5 (E. coli), mRNA (cDNA clone MGC:71143 IMAGE:6339184), complete cds. ACCESSION BC062339 VERSION BC062339.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2992) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2992) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (17-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 50 Row: m Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40353209. FEATURES Location/Qualifiers source 1..2992 /db_xref="H-InvDB:HIT000260339" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:71143 IMAGE:6339184" /tissue_type="Brain, neuroblastoma" /clone_lib="NIH_MGC_47" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2992 /gene="ALKBH5" /gene_synonym="FLJ20308" /gene_synonym="OFOXD" /db_xref="GeneID:54890" /db_xref="HGNC:HGNC:25996" CDS 270..1646 /gene="ALKBH5" /gene_synonym="FLJ20308" /gene_synonym="OFOXD" /codon_start=1 /product="alkB, alkylation repair homolog 5 (E. coli)" /protein_id="AAH62339.1" /db_xref="GeneID:54890" /db_xref="HGNC:HGNC:25996" /translation="MAAASGYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAA AAAAEPYPVSGAKRKYQEDSDPERSDYEEQQLQKEEEARKVKSGIRQMRLFSQDECAK IEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGD VDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSV SFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKER RAVIILRKTRLDAPRLETKSLSSSVLPPSYASDRLSGNNRDPALKPKRSHRKADPDAA HRPRILEMDKEENRRSVLLPTHRRRGSFSSENYWRKSYESSEDCSEAAGSPGNSGSSL RSCPSFCFEGFVFVHWGVFVFCFLFFLILYIFPWFCCLLGLKNRIGQDLGSHILGIPP GWKGCWHQ" BASE COUNT 614 a 850 c 826 g 702 t ORIGIN 1 gaggcgctgc tggcgcccct gccccgcggg acgtggagaa ggtggaggag gaagaagccc 61 cgttgtcgcc accgttgcat gacccgccgc tcctgaggcc ctaccccacg cccggaccct 121 cgacgccccc cgccgggtcc cccactcacg catgggggtt cggcgctaag gacccccctc 181 cctccggggg ccccggggcg cgtcccctta gagccatgcc cggctgcccc gcccgccccg 241 gaggacccta gagcagcgtc gtgggggcca tggcggccgc cagcggctac acggacctgc 301 gtgagaagct caagtccatg acgtcccggg acaactataa ggcgggcagc cgggaggccg 361 ccgccgctgc cgcagccgcc gtagccgccg cagccgcagc cgccgctgcc gccgaacctt 421 accctgtgtc cggggccaag cgcaagtatc aggaggactc ggaccccgag cgcagcgact 481 atgaggagca gcagctgcag aaggaggagg aggcgcgcaa ggtgaagagc ggcatccgcc 541 agatgcgcct cttcagccag gacgagtgcg ccaagatcga ggcccgcatt gacgaggtgg 601 tgtcccgcgc tgagaagggc ctgtacaacg agcacacggt ggaccgggcc ccactgcgca 661 acaagtactt cttcggcgaa ggctacactt acggcgccca gctgcagaag cgcgggcccg 721 gccaggagcg cctctacccg ccgggcgacg tggacgagat ccccgagtgg gtgcaccagc 781 tggtgatcca aaagctggtg gagcaccgcg tcatccccga gggcttcgtc aacagcgccg 841 tcatcaacga ctaccagccc ggcggctgca tcgtgtctca cgtggacccc atccacatct 901 tcgagcgccc catcgtgtcc gtgtccttct ttagcgactc tgcgctgtgc ttcggctgca 961 agttccagtt caagcctatt cgggtgtcgg aaccagtgct ttccctgccg gtgcgcaggg 1021 gaagcgtgac tgtgctcagt ggatatgctg ctgatgaaat cactcactgc atacggcctc 1081 aggacatcaa ggagcgccga gcagtcatca tcctcaggaa gacaagatta gatgcacccc 1141 ggttggaaac aaagtccctg agcagctccg tgttaccacc cagctatgct tcagatcgcc 1201 tgtcaggaaa caacagggac cctgctctga aacccaagcg gtcccaccgc aaggcagacc 1261 ctgatgctgc ccacaggcca cggattctgg agatggacaa ggaagagaac cggcgctcgg 1321 tgctgctgcc cacacaccgg cggaggggta gcttcagctc tgagaactac tggcgcaagt 1381 catacgagtc ctcagaggac tgctctgagg cagcaggcag ccctgggaac tctggctcat 1441 ccttacgtag ttgcccctcc ttttgttttg agggttttgt ttttgttcat tggggggttt 1501 ttgttttttg ttttttgttt tttttgattc tatatatttt tccttggttt tgttgcctgt 1561 tagggctgaa gaatagaatt ggccaggacc taggttctca tattcttggt attcctcctg 1621 gatggaaagg ctgttggcat caatagggga cagaggctga tgctggagtg gccagtagag 1681 gtggtggagc agagcagcca tcttttaagt ggggctgtat caggctgggt ttatttaaaa 1741 gcaacaaaat gttttggtta agaaaattat tttgctttca gtgtaaatct tcgcagtgtt 1801 ctaaacaaag ttcagtcttc tgctcgcccc tttccctcac tgatgtctgc acttggttga 1861 ggtctcctgg agcctcacag gctctgctgt tctccacttc tcacctgcca tccacgccct 1921 gcaagctcat gcaaacaccc tttcttcctc ctgcggcaga gttgttcagg ttgcctgggc 1981 aggggcttaa acagtgccag cccctgccat cccaaagcta ttgttaagcc ccccaggcgt 2041 cctccaccca cgcccactag cctgccatgt ccacagttcc ttgggctgct gaggggctag 2101 tgcagtggtc ctgacctctc ttatcaggag cacacttctt tgctggttgc tccttttgag 2161 catatgcgtg tgattatttg gaacagttag acttgccacg ttgggtcagt tttagaaatt 2221 gtttctagct agagggactg gtgtccttcc aagtctagca tttggggtat ggaaaattgt 2281 tgtggtgtgt ggtagggttt ttgttttctt ttttgagttt ttttttcccc ctttagtctc 2341 ctggcttttt cctttccctt cccttctcca ctggccagct tgggcctcat cctcatgtca 2401 tccttctagg aaggcgcctg ccccatcttg tctgccggca gcatgcatcc aaggccagag 2461 ctcaggcctg cagactgggc tggtgcctcc tccgcttcag ggtatgggag ttggtgaagg 2521 ggctttcaaa aaataataag gaaaaaaagg taaagtcttt ggtagcttct atccactcag 2581 atcctggaag gcagcaaggt tttgtggatc tagattcatt aggaatgtct tcttgtcagc 2641 caggccagga cccgggcttg ccaagagcag aggccctccc agcaaccagg ataccaccac 2701 tttgggggct ttgtgtacag aggtccgggt ctgagacctc ataggctgca gaaatctggg 2761 gcagccacca tcaagaagcc cctctcaggg gccagaactc ctttgccagc gtggatttct 2821 caagtcggga ctgcataatt aaagcagttg cagttttatt ttttttacag cttttttccc 2881 aaaaatgatt tgtagttgtg tgtgcagcac ttcgccctga tatgtgtgct ctacaataaa 2941 aaccaaatct aatatatttt gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa //