LOCUS BC062320 2004 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens hyaluronan and proteoglycan link protein 3, mRNA (cDNA
clone MGC:71328 IMAGE:5090960), complete cds.
ACCESSION BC062320
VERSION BC062320.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2004)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2004)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: g Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..2004
/db_xref="H-InvDB:HIT000260321"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71328 IMAGE:5090960"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2004
/gene="HAPLN3"
/db_xref="GeneID:145864"
CDS 326..1408
/gene="HAPLN3"
/codon_start=1
/product="HAPLN3 protein"
/protein_id="AAH62320.1"
/db_xref="GeneID:145864"
/translation="MGLLLLVPLLLLPGSYGLPFYNGFYYSNSANDQNLGNGHGKDLL
NGVKLVVETPEETLFTYQGASVILPCRYRYEPALVSPRRVRVKWWKLSENGAPEKDVL
VAIGLRHRSFGDYQGRVHLRQDKEHDVSLEIQDLRLEDYGRYRCEVIDGLEDESGLVE
LELRGVVFPYQSPNGRYQFNFHEGQQVCAEQAAVVASFEQLFRAWEEGLDWCNAGWLQ
DATVQYPIMLPRQPCGGPGLAPGVRSYGPRHRRLHRYDVFCFATALKGRVYYLEHPEK
LTLTEAREACQEDDATIAKVGQLFAAWKFHGLDRCDAGWLADGSVRYPVVHPHPNCGP
PEPGVRSFGFPDPQSRLYGVYCYRQH"
misc_feature 512..811
/gene="HAPLN3"
/note="IG; Region: Immunoglobulin"
/db_xref="CDD:smart00409"
misc_feature 821..1108
/gene="HAPLN3"
/note="LINK; Region: Link (Hyaluronan-binding)"
/db_xref="CDD:smart00445"
misc_feature 1124..1399
/gene="HAPLN3"
/note="LINK; Region: Link (Hyaluronan-binding)"
/db_xref="CDD:smart00445"
BASE COUNT 352 a 591 c 620 g 441 t
ORIGIN
1 gtctggcggg agcgcggggg tttttctgct gccgcttcct ttctgccctt ttaatttccc
61 cgaaatcaga ctgctgcctt ggaccgggac agctcgcggc ccccgagagc tctagccgtc
121 gaggagctgc ctggggacga tgaggaaatg gaggcacaga gaggtgaact tgcccgaagt
181 cactcagcag gatgcagtgt gtccagctcc aataccgagc ccaggtctga gtgcccagac
241 aggactccag aagatttggg gaactatcca ctgccaagtt tgccctgggg ccccagcctg
301 gcccgggtca ccctggcatg aggagatggg cctgttgctc ctggtcccgt tgctcctgct
361 gcccggctcc tacggactgc ccttctacaa cggcttctac tactccaaca gcgccaacga
421 ccagaaccta ggcaacggtc atggcaaaga cctccttaat ggagtgaagc tggtggtgga
481 gacacccgag gagaccctgt tcacctacca aggggccagt gtgatcctgc cctgccgcta
541 ccgctacgag ccggccctgg tctccccgcg gcgtgtgcgt gtcaaatggt ggaagctgtc
601 ggagaacggg gccccagaga aggacgtgct ggtggccatc gggctgaggc accgctcctt
661 tggggactac caaggccgcg tgcacctgcg gcaggacaaa gagcatgacg tctcgctgga
721 gatccaggat ctgcggctgg aggactatgg gcgttaccgc tgtgaggtca ttgacgggct
781 ggaggatgaa agcggtctgg tggagctgga gctgcggggt gtggtctttc cttaccagtc
841 ccccaacggg cgctaccagt tcaacttcca cgagggccag caggtctgtg cagagcaggc
901 tgcggtggtg gcctcctttg agcagctctt ccgggcctgg gaggagggcc tggactggtg
961 caacgcgggc tggctgcagg atgccacggt gcagtacccc atcatgttgc cccggcagcc
1021 ctgcggtggc ccgggcctgg cacctggcgt gcgaagctac ggcccccgcc accgccgcct
1081 gcaccgctat gatgtattct gcttcgctac tgccctcaag gggcgggtgt actacctgga
1141 gcaccctgag aagctgacgc tgacagaggc aagggaggcc tgccaggaag atgatgccac
1201 gatcgccaag gtgggacagc tctttgccgc ctggaagttc catggcctgg accgctgcga
1261 cgctggctgg ctggcagatg gtagcgtccg ctaccctgtg gttcacccgc atcctaactg
1321 tgggccccca gagcctgggg tccgaagctt tggcttcccc gacccgcaga gccgcttgta
1381 cggtgtttac tgctaccgcc agcactagga cctggggccc tcccctgccg cattccctca
1441 ctggctgtgt atttattgag tggttcgttt ttccttgtgg gttggagcca ttttaactgt
1501 ttttatactt ctcaatttaa attttcttta aacatttttt tactattttt tgtgggcttc
1561 tggagggttc cccgccatcc aggctggtct ccctccctta aggaggttgg tgcccagagt
1621 gggcggtggc ctgtctagaa tgccgccggg agtccgggca tggtgggcac agttctccct
1681 gcccctcagc ctgggggaag aagagggcct cgggggcctc cggagctggg ctttgggcct
1741 ctcctgccca cctctacttc tctgtgaagc cgctgacccc agtctgccca ctgaggggct
1801 agggctggaa gccagttcta ggcttccagg cgaaagctga gggaaggaag aaactcccct
1861 ccccgttccc cttcccctct cggttccaaa gaatctgttt tgttgtcatt tgtttctcct
1921 gtttccctgt gtggggaggg gccctcaggt gtgtgtactt tggacaataa atggtgctat
1981 gactgcaaaa aaaaaaaaaa aaaa
//