LOCUS BC061914 1046 bp mRNA linear HUM 17-SEP-2007 DEFINITION Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G, mRNA (cDNA clone IMAGE:3905631), complete cds. ACCESSION BC061914 VERSION BC061914.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1046) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1046) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (10-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 134 Row: d Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13399303 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1046 /db_xref="H-InvDB:HIT000260266" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3905631" /tissue_type="Uterus, leiomyosarcoma" /clone_lib="NIH_MGC_71" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1046 /gene="APOBEC3G" /gene_synonym="ARP9" /gene_synonym="bK150C2.7" /gene_synonym="CEM15" /gene_synonym="dJ494G10.1" /gene_synonym="MDS019" /db_xref="GeneID:60489" /db_xref="HGNC:HGNC:17357" /db_xref="MIM:607113" CDS 242..481 /gene="APOBEC3G" /gene_synonym="ARP9" /gene_synonym="bK150C2.7" /gene_synonym="CEM15" /gene_synonym="dJ494G10.1" /gene_synonym="MDS019" /codon_start=1 /product="APOBEC3G protein" /protein_id="AAH61914.1" /db_xref="GeneID:60489" /db_xref="HGNC:HGNC:17357" /db_xref="MIM:607113" /translation="MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGP SRPPLDAKIFRGQVPPGLQSLCRQELSQLGKQTTH" BASE COUNT 265 a 269 c 258 g 254 t ORIGIN 1 agaggtccct ctgccagggg gagggcccca gagaaaacca gaaagagggt gagagactga 61 ggaagataaa gcgtcccagg gcctcctaca ccagcgcctg agcaggaagc gggaggggcc 121 atgactacga ggccctggga ggtcacttta gggagggctg tcctaaaacc agaagcttgg 181 agcagaaagt gaaaccctgg tgctccagac aaagatctta gtcgggacta gccggccaag 241 gatgaagcct cacttcagaa acacagtgga gcgaatgtat cgagacacat tctcctacaa 301 cttttataat agacccatcc tttctcgtcg gaataccgtc tggctgtgct acgaagtgaa 361 aacaaagggt ccctcaaggc cccctttgga cgcaaagatc tttcgaggcc aggtaccacc 421 cggactccaa tcactttgca ggcaggagct aagccagctg ggaaagcaaa ccacgcactg 481 ataagtgaag tgcccggcgg cgggctatcc agtgtgtcct tctctcccac actttccaag 541 tccgtggccc tgaccttcct gctggaccgt cctgggatcg gatcgtggag ggggtttgcc 601 tctgcacaaa aggccttgtg tttccgtttt tcttttcttt tcttttttct tttttttttt 661 tgagacagag tttcactctt gttgctcagg ctggagtgca atgacgcgat ctcggctcgc 721 agcaacctct gcctcctggg ttcaagcgat gctgtcgcct cagactcgca agtggctgcg 781 attacaggtg cccaccacca cgcccagctg attttttttt tgtattttta gtacagatgg 841 ggtttcacca tattcaccag gctggtctcg aacttctgac ctcaggtgat ccacctgcct 901 cggcctccca aagtgttggg attacaggtg tgagccacag cgccggccta attttaatat 961 ttaattaatc caatgtggct aacatattac ttcaacatta attaacataa aattcttgac 1021 aagataaaaa aaaaaaaaaa aaaaaa //