LOCUS BC061696 1850 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens ATG4 autophagy related 4 homolog A (S. cerevisiae), mRNA (cDNA clone MGC:62085 IMAGE:4594225), complete cds. ACCESSION BC061696 VERSION BC061696.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1850) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1850) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CLONTECH cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 48 Row: d Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 30795249. FEATURES Location/Qualifiers source 1..1850 /db_xref="H-InvDB:HIT000260228" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:62085 IMAGE:4594225" /tissue_type="Kidney" /clone_lib="NIH_MGC_75" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1850 /gene="ATG4A" /db_xref="GeneID:115201" /db_xref="HGNC:HGNC:16489" CDS 163..1359 /gene="ATG4A" /codon_start=1 /product="ATG4 autophagy related 4 homolog A (S. cerevisiae)" /protein_id="AAH61696.1" /db_xref="GeneID:115201" /db_xref="HGNC:HGNC:16489" /translation="MESVLSKYEDQITIFTDYLEEYPDTDELVWILGKQHLLKTEKSK LLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWE KQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLAL FDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCS AWKPLLLIVPLRLGINQINPVYVDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELI FLDPHTTQTFVDTEENGTVNDQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWC SLVQKEILKENLRMFELVQKHPSHWPPFVPPAKPEVTTTGAEFIDSTEQLEEFDLEED FEILSV" BASE COUNT 576 a 388 c 418 g 468 t ORIGIN 1 gggggagttg cagtttgaga gcagttccgg gcagggaggc gcctttgctg ccctcacaga 61 cttggcccct agcagtgcag aactacaagt cccagggatc ctagcgaccg tccgtccgta 121 gtcaagttgc cggtggaatt ggcccaggat gacagctgga gaatggagtc agttttatcc 181 aagtatgaag atcagattac tattttcact gactacctag aagaatatcc agatacagat 241 gagctggtat ggatcttagg gaagcagcat ctccttaaaa cagaaaaatc taagctgttg 301 tctgatataa gtgctcgtct atggtttaca tacagaagga aattttcacc aattggtgga 361 acgggccctt catcagatgc tggttgggga tgtatgctac gctgtggaca gatgatgctg 421 gctcaagccc ttatctgtag acacttggga agggactgga gctgggagaa acaaaaagaa 481 caacccaaag aataccaacg catcctacag tgcttcttag atagaaaaga ttgttgctac 541 tctatccatc aaatggcaca aatgggtgta ggagaaggga aatcaattgg agaatggttt 601 ggaccaaata cagttgcaca ggtgttaaaa aaacttgctt tatttgacga atggaattcc 661 ttggctgttt atgtttcaat ggataacaca gtggtcattg aagatatcaa aaaaatgtgc 721 cgtgtccttc ccttgagtgc tgacacagct ggtgacaggc ctcccgattc tttaactgct 781 tcaaaccaga gtaagggcac ctctgcctac tgctcagcct ggaaacccct gctgctcatt 841 gtgccccttc gcctgggcat aaaccaaatc aatcctgtct atgttgatgc attcaaagag 901 tgttttaaga tgccacagtc tttaggggca ttaggaggaa aaccaaataa cgcgtattat 961 ttcataggat tcttaggtga cgagctcatc ttcttggacc ctcatacaac ccagaccttt 1021 gttgacactg aagagaatgg aacggttaat gaccagactt tccattgcct gcagtcccca 1081 cagcgaatga acatcctaaa cctggatcct tcagttgcat tgggattttt ctgcaaagaa 1141 gaaaaagact ttgataactg gtgtagcctt gttcagaagg aaattctaaa ggagaattta 1201 aggatgtttg aattagttca gaaacatcca tcacactggc ctccctttgt acctccagcc 1261 aagccagaag tgacaaccac tggggcagaa ttcattgact ctactgagca actggaggag 1321 tttgatctgg aggaagattt tgagattctg agtgtgtaga atcctgggaa ctcaacttga 1381 aggtctgtct tccatctggc accataaaaa catgaactta ttgcataaaa cttttctagt 1441 cagcaagtgc ctgatatgcc aatagcatac aaactcaata gcaatcatga ctgagccaat 1501 cactgtttct cagaaaaaca aaacaaaaca aaacaaatga cagtaaccct tccccggaaa 1561 gaaatagaac aatcatggag cctaggagca gagagatgag gaggagttca ttgcttccca 1621 gcttgtgtta tatggctaca gcaagtcttc agctgctgca atgaggaaat gggcatctgg 1681 aagacaaaca gcaactctca gcttgcttca agaaccagca gataagagat ggttaagctg 1741 ttcttcaccc tttcagatgt gacctctttt ggactaagca gcaatctgtt ctcttgctca 1801 aataataaag tgactgaatc agaaaaaaaa aaaaaaaaaa aaaaaaaaaa //