LOCUS BC061516 1264 bp mRNA linear HUM 24-NOV-2003
DEFINITION Homo sapiens chromodomain protein, Y-like, mRNA (cDNA clone
IMAGE:6503066), partial cds.
ACCESSION BC061516
VERSION BC061516.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1264)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1264)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (04-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: j Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25777620.
FEATURES Location/Qualifiers
source 1..1264
/db_xref="H-InvDB:HIT000260194"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6503066"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1264
/gene="CDYL"
/gene_synonym="CDYL1"
/gene_synonym="DKFZP586C1622"
/db_xref="GeneID:9425"
/db_xref="MIM:603778"
CDS <1..1043
/gene="CDYL"
/gene_synonym="CDYL1"
/gene_synonym="DKFZP586C1622"
/codon_start=3
/product="CDYL protein"
/protein_id="AAH61516.1"
/db_xref="GeneID:9425"
/db_xref="MIM:603778"
/translation="RMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALTAN
GTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTH
ILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRL
TDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAW
FQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGT
FTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDS
MLKYLQRKIDEF"
misc_feature 336..818
/gene="CDYL"
/gene_synonym="CDYL1"
/gene_synonym="DKFZP586C1622"
/note="ECH; Region: Enoyl-CoA hydratase/isomerase family.
This family contains a diverse set of enzymes including:
Enoyl-CoA hydratase. Napthoate synthase. Carnitate
racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase"
/db_xref="CDD:pfam00378"
BASE COUNT 356 a 287 c 335 g 286 t
ORIGIN
1 ccaggatggg gagcaggccc aggatacacc cactagtgcc tcaggtgccc ggccctgtga
61 ctgcagccat ggccacaggc ttagctgtta acgggaaagg tacatctccg ttcatggatg
121 cattaacagc caatgggaca accaacatac agacatctgt tacaggagtg actgccagca
181 aaaggaaatt tattgacgac agaagagacc agccttttga caagcgattg cgtttcagcg
241 tgaggcaaac agaaagtgcc tacagataca gagatattgt ggtcaggaag caggatggct
301 tcacccacat cttgttatcc acaaagtcct cagagaataa ctcactaaat ccagaggtaa
361 tgagagaagt ccagagtgct ctgagcacgg ccgctgccga tgacagcaag ctggtactgc
421 tcagcgccgt tggcagcgtc ttctgttgtg gacttgactt tatttatttt atacgacgtc
481 tgacagatga caggaaaaga gaaagcacta aaatggcaga agctatcaga aacttcgtga
541 atactttcat tcaatttaag aagcccatta ttgtagcagt caatggccca gccattggtc
601 taggagcatc tatattgcct ctttgcgatg tggtttgggc taatgaaaag gcttggtttc
661 aaacacccta taccaccttc ggacagagtc cagatggctg ttctaccgtt atgtttccca
721 agataatggg aggagcatct gcaaacgaga tgctgctcag tggacggaag ctgacagcgc
781 aggaggcgtg tggcaagggc ctggtctccc aggtgttttg gcccgggacg ttcactcagg
841 aagtgatggt tcgcattaag gagcttgcct cgtgcaatcc agttgtgctt gaggaatcca
901 aagccctcgt gcgctgcaac atgaagatgg agctggagca ggccaacgag agggagtgtg
961 aggtgctgaa gaaaatctgg ggctcggccc aggggatgga ctccatgtta aagtacttgc
1021 agaggaagat cgatgagttc tgagtgtcgg gctgcccact ggtgacaccg ggatcgggct
1081 gagcaggaga acatcaccgg ctccagttcc cctgatccat tctcacagcc tgaaacaagc
1141 tcacccgtag cttacgcttg gaagcaggac tgggaacatc cacgctattt attatcgagg
1201 agttttaaag tactgtaact ttaaaataaa taactacaaa gcttctttaa aaaaaaaaaa
1261 aaaa
//