LOCUS BC060871 4512 bp mRNA linear HUM 11-APR-2007
DEFINITION Homo sapiens pyridoxal-dependent decarboxylase domain containing 1,
mRNA (cDNA clone MGC:71824 IMAGE:30347972), complete cds.
ACCESSION BC060871
VERSION BC060871.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4512)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4512)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: j Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39930344.
FEATURES Location/Qualifiers
source 1..4512
/db_xref="H-InvDB:HIT000260173"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71824 IMAGE:30347972"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4512
/gene="PDXDC1"
/gene_synonym="LP8165"
/db_xref="GeneID:23042"
/db_xref="HGNC:HGNC:28995"
CDS 72..2438
/gene="PDXDC1"
/gene_synonym="LP8165"
/codon_start=1
/product="pyridoxal-dependent decarboxylase domain
containing 1"
/protein_id="AAH60871.1"
/db_xref="GeneID:23042"
/db_xref="HGNC:HGNC:28995"
/translation="MDASLEKIADPTLAEMGKNLKEAVKMLEDSQRRTEEENGKKLIS
GDIPGPLQGSGQDMVSILQLVQNLMHGDEDEEPQSPRIQNIGEQGHMALLGHSLGAYI
STLDKEKLRKLTTRILSDTTLWLCRIFRYENGCAYFHEEEREGLAKICRLAIHSRYED
FVVDGFNVLYNKKPVIYLSAAARPGLGQYLCNQLGLPFPCLCRVPCNTVFGSQHQMDV
AFLEKLIKDDIERGRLPLLLVANAGTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLAT
LALGYVSSSVLAAAKCDSMTMTPGPWLGLPAVPAVTLYKHDDPALTLVAGLTSNKPTD
KLRALPLWLSLQYLGLDGFVERIKHACQLSQRLQESLKEVNYIKILVEDELSSPVVVF
RFFQELPGSDPVFKAVPVPNMTPSGVGRERHSCDALNRWLGEQLKQLVPASGLTVMDL
EAEGTCLRFSPLMTAAVLGTRGEDVDQLVACIESKLPVLCCTLQLREEFKQEVEATAG
LLYVDDPNWSGIGVVRYEHANDDKSSLKSDPEGENIHAGLLKKLNELESDLTFKIGPE
YKSMKSCLYVGMASDNVDAAELVETIAATAREIEENSRLLENMTEVVRKGIQEAQVEL
QKASEERLLEEGVLRQIPVVGSVLNWFSPVQALQKGRTFNLTAGSLESTEPIYVYKAQ
GAGVTLPPTPSGSRTKQRLPGQKPFKRSLRGSDALSETSSVSHIEDLEKVERLSSGPE
QITLEASSTEGHPGAPSPQHTDQTEAFQKGVPHPEDDHSQVEGPESLR"
BASE COUNT 1258 a 962 c 1136 g 1156 t
ORIGIN
1 gaaggagctg cggggcgcgg gaggaggaag tagagcccgg gaccgccagg ccaccaccgg
61 ccgcctcagc catggacgcg tccctggaga agatagcaga ccccacgtta gctgaaatgg
121 gaaaaaactt gaaggaggca gtgaagatgc tggaggacag tcagagaaga acagaagagg
181 aaaatggaaa gaagctcata tccggagata ttccaggccc actccagggc agtgggcaag
241 atatggtgag catcctccag ttagttcaga atctcatgca tggagatgaa gatgaggagc
301 cccagagccc cagaatccaa aatattggag aacaaggtca tatggctttg ttgggacata
361 gtctgggagc ttatatttca actctggaca aagagaagct gagaaaactt acaactagga
421 tactttcaga taccacctta tggctatgca gaattttcag atatgaaaat gggtgtgctt
481 atttccacga agaggaaaga gaaggacttg caaagatatg taggcttgcc attcattctc
541 gatatgaaga cttcgtagtg gatggcttca atgtgttata taacaagaag cctgtcatat
601 atcttagtgc tgctgctaga cctggcctgg gccaatacct ttgtaatcag ctcggcttgc
661 ccttcccctg cttgtgccgt gtaccctgta acactgtgtt tggatcccag catcagatgg
721 atgttgcctt cctggagaaa ctgattaaag atgatataga gcgaggaaga ctgcccctgt
781 tgcttgtcgc aaatgcagga acggcagcag taggacacac agacaagatt gggagattga
841 aagaactctg tgagcagtat ggcatatggc ttcatgtgga gggtgtgaat ctggcaacat
901 tggctctggg ttatgtctcc tcatcagtgc tggctgcagc caaatgtgat agcatgacga
961 tgactcctgg cccgtggctg ggtttgccag ctgttcctgc ggtgacactg tataaacacg
1021 atgaccctgc cttgacttta gttgctggtc ttacatcaaa taagcccaca gacaaactcc
1081 gtgccctgcc tctgtggtta tctttacaat acttgggact tgatgggttt gtggagagga
1141 tcaagcatgc ctgtcaactg agtcaacggt tgcaggaaag tttgaaggaa gtgaattaca
1201 tcaaaatctt ggtggaagat gagctcagct ccccagtggt ggtgttcaga tttttccagg
1261 aattaccagg ctcagatccg gtgtttaaag ccgtcccagt gcccaacatg acaccttcag
1321 gagtcggccg ggagaggcac tcgtgtgacg cgctgaatcg ctggctggga gaacagctga
1381 agcagctggt gcctgcaagc ggcctcacag tcatggatct ggaagctgag ggcacgtgtt
1441 tgcggttcag ccctttgatg accgcagcag ttttaggaac tcggggagag gatgtggatc
1501 agctcgtagc ctgcatagaa agcaaactgc cagtgctgtg ctgtacgctc cagttgcgtg
1561 aagagttcaa gcaggaagtg gaagcaacag caggtctcct atatgttgat gaccctaact
1621 ggtctggaat aggggttgtc aggtatgaac atgctaatga tgataagagc agtttgaaat
1681 cagatcccga aggggaaaac atccatgctg gactcctgaa gaagttaaat gaactggaat
1741 ctgacctaac ctttaaaata ggccctgagt ataagagcat gaagagctgc ctttatgtcg
1801 gcatggcgag cgacaacgtc gatgctgctg agctcgtgga gaccattgcg gccacagccc
1861 gggagataga ggagaactcg aggcttctgg aaaacatgac agaagtggtt cggaaaggca
1921 ttcaggaagc tcaagtggag ctgcagaagg caagtgaaga acggcttctg gaagaggggg
1981 tgttgcggca gatccctgta gtgggctccg tgctgaattg gttttctccg gtccaggctt
2041 tacagaaggg aagaactttt aacttgacag caggctctct ggagtccaca gaacccatat
2101 atgtctacaa agcacaaggt gcaggagtca cgctgcctcc aacgccctcg ggcagtcgca
2161 ccaagcagag gcttccaggc cagaagcctt ttaaaaggtc cctgcgaggt tcagatgctt
2221 tgagtgagac cagctcagtc agtcacattg aagacttaga aaaggtggag cgcctatcca
2281 gtgggccgga gcagatcacc ctcgaggcca gcagcactga gggacaccca ggggctccca
2341 gccctcagca caccgaccag accgaggcct tccagaaagg ggtcccacac ccagaagatg
2401 accactcaca ggtagaagga ccggagagct taagatgaga ctcattgtgt ggtttgagac
2461 tgtactgagt attgtttcag ggaagatgaa gttctattgg aaatgtgaac tgtgccacat
2521 actaatataa attactgttg tttgtgcttc actgggattt tggcacaaat atgtgcctga
2581 aaggtaggct ttctaggagg ggagtcagct tgtctaactt catgtacatg tagaaccaca
2641 tgtttgctgt cctactacga cttttcccta agttaccata aacacatttt attcacaaaa
2701 aacacttcga atttcaagtg tctaccagta gcacccttgc tctttctaaa cataagccta
2761 agtatatgag gttgcccgtg gcaacttttt ggtaaaacag cttttcatta gcactctcca
2821 ggttctctgc aacacttcac agaggcgaga ctggctgtat cctttgctgt cggtctttag
2881 tacgatcaag ttgcaatata cagtgggact gctagacttg aaggagagca gtgattgtgg
2941 gattgtaaat aagagcatca gaagccctcc ccagctactg ctcttcgtgg agacttagta
3001 aggactgtgt ctacttgagc tgtggcaagg ctgctgcctg ggactgtcct ctgccacaag
3061 gccatttctc ccattatata ccgtttgtaa agagaaactg taaagtctcc tcctgaccat
3121 atatttttaa atactggcaa agcttttaaa attggcacac aagtacagac tgtgctcatt
3181 tctgtttagt atctgaaaac ctgatagatg ctacccttaa gagcttgctc ttccgtgtgc
3241 tacgtagcac ccacctggtt aaaatctgaa aacaagtacc cctttgacct gtctcccact
3301 gaagcttcta ctgccctggc agctcgcctg ggcccaactc agaaacagga gccagcagag
3361 cactctctca cgctgatcca gccgggcacc ctgcttaagt cagtagaagc tcgctggcac
3421 tgcccgttcc tacttttccg aagtactgcg tcactttgtc gtaagtaatg gcccctgtgc
3481 cttcttaatc cagcagtcaa gcttttggga gacctgaaaa tgggaaaatt cacactgggt
3541 ttctggactg tagtattgga agccttagtt atagtatatt aagcctataa ttatactctg
3601 atttgatggg atttttgaca tttacacttg tcaaaatgca gggggttttt tttggtgcag
3661 atgattaaac agtcttccct atttggtgca atgaagtata gcagataaaa tgggggaggg
3721 gtaaattatc accttcaaga aaattacatg tttttatata tatttggaat tgttaaattg
3781 gttttgctga aacatttcac ccttgagata ttatttgaat gttggtttca ataaaggttc
3841 ttgaaattgt taccagtgaa ttcagtttat aaatcttatt acaaaagact tacccacgta
3901 cctgaaatag ctgccgatag accagtgaga ggtaggttct cctctgcccg ttattaccga
3961 ccaaaaaaaa aactggacat caatttttta gtaaaccaaa aaataagtct caacaaatgc
4021 ctttgccaaa ataaggtttt attttgaaag tcatttgatg aaagtcattt gaaagacact
4081 gaggagggaa ggaggcctaa gacccaacag atgtaggatc cagatctgga ttcgtgccag
4141 ccccaccaat ggtctgtcag gccaagaagg tgctttcttt ggtaattcat gttttttaac
4201 ttcctggaga agagatcttt tcccacaagc catcttcatt ttttttgtag agtagggctt
4261 tatttccaga aaacagtgtg tgagctggag atgggtgttt ttttaaaaac atcaaggtag
4321 atctaatatg ttcaacaaag tggggtggct cagccagagg cgaagtggaa agattctgaa
4381 aacacaagat ggtgggcatt agagaagcca accttactgt cccctgctgt gataaagatg
4441 tcaaagtatc tttgttcttg gacacaaata tatataataa aatacgttaa gaaacgaaaa
4501 aaaaaaaaaa aa
//