LOCUS       BC060846                3669 bp    mRNA    linear   HUM 25-AUG-2005
DEFINITION  Homo sapiens ubiquitin specific peptidase 42, mRNA (cDNA clone
            IMAGE:30343487), partial cds.
ACCESSION   BC060846
VERSION     BC060846.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3669)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 3669)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (03-NOV-2003) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Dr. Stefan Hansson
            cDNA Library Preparation: Michael Brownstein /  Ted Usdin
            Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 133 Row: g Column: 6
            This clone was selected for full length sequencing because it
            passed the following selection criteria: Hexamer frequency ORF
            analysis, GenomeScan gene prediction, Similarity but not identity
            to protein.
FEATURES             Location/Qualifiers
     source          1..3669
                     /db_xref="H-InvDB:HIT000260148"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:30343487"
                     /tissue_type="Placenta, normal"
                     /clone_lib="NIH_MGC_147"
                     /lab_host="DH10B"
                     /note="Vector: pBluescriptR"
     gene            1..>3669
                     /gene="USP42"
                     /gene_synonym="FLJ12697"
                     /db_xref="GeneID:84132"
     CDS             63..>3669
                     /gene="USP42"
                     /gene_synonym="FLJ12697"
                     /codon_start=1
                     /product="USP42 protein"
                     /protein_id="AAH60846.2"
                     /db_xref="GeneID:84132"
                     /translation="MTIVDKASESSDPSAYQNQPGSSEAVSPGDMDAGSASWGAVSSL
                     NDVSNHTLSLGPVPGAVVYSSSSVPDKSKPSPQKDQALGDGIAPPQKVLFPSEKICLK
                     WQQTHRVGAGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQ
                     AHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSN
                     KLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKAAQSVNKALEQ
                     FVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKY
                     PEYLDIRPYMSQPNGEPIVYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVS
                     TSDIRSVLSQQAYVLFYIRSHDVKNGGELTHPTHSPGQSSPRPVISQRVVTNKQAAPG
                     FIGPQLPSHMIKNPPHLNGTGPLKDTPSSSMSSPNGNSSVNRASPVNASASVQNWSVN
                     RSSVIPEHPKKQKITISIHNKLPVRQCQSQPNLHSNSLENPTKPVPSSTITNSAVQST
                     SNASTMSVSSKVTKPIPRSESCSQPVMNGKSKLNSSVLVPYGAESSEDSDEESKGLGK
                     ENGIGTIVSSHSPGQDAEDEEATPHELQEPMTLNGANSADSDSDPKENGLAPDGASCQ
                     GQPALHSENPFAKANGLPGKLMPAPLLSLPEDKILETFRLSNKLKGSTDEMSAPGAER
                     GPPEDRDAEPQPGSPAAESLEEPDAAAGLSSTKKAPPPRDPGTPATKEGAWEAMAVAP
                     EEPPPSAGEDIVGDTAPPDLCDPGSLTGDASPLSQDAKGMIAEGPRDSALAEAPEGLS
                     PAPPARSEEPCEQPLLVHPSGDHARDAQDPSQSLGAPEAAERPPAPVLDMAPAGHPEG
                     DAEPSPGERVEDAAAPKAPGPSPAKEKIGSLRKVDRGHYRSRRERSSSGEPARESRSK
                     TEGHRHRRRRTCPRERDRQDRHAPEHHPGHGDRLSPGERRSLGRCSHHHSRHRSGVEL
                     DWVRHHYTEGERGWGREKFYPDRPRWDRCRYYHDRYALYAARDWKPFHGGREHERAGL
                     HERPHKDHNRGRRGCEPARERERHRPSSPRAGAPHALAPHPDRFSHDRTALVAGDNCN
                     LSDRFHEHENGKSRKRRHDSVENSDSHVEKKARRSEQKDPLEEPKAKKHKKSKKKK"
BASE COUNT          930 a         1069 c          977 g          693 t
ORIGIN      
        1 gtgtgcggcg gcggcggcgg cggccgaggg ggatggagcg agcgccgagc cggagttgaa
       61 caatgaccat agttgacaaa gcttctgaat cttcagaccc atcagcctat cagaatcagc
      121 ctggcagctc cgaggcagtc tcacctggag acatggatgc aggttctgcc agctggggtg
      181 ctgtgtcttc attgaatgat gtgtcaaatc acacactttc tttaggacca gtacctggtg
      241 ctgtagttta ttcgagttca tctgtacctg ataaatcaaa accatcacca caaaaggatc
      301 aagccctagg tgatggcatc gctcctccac agaaagttct tttcccatct gagaagattt
      361 gtcttaagtg gcaacaaact catagagttg gagctgggct ccagaatttg ggcaatacct
      421 gttttgccaa tgcagcactg cagtgtttaa cctacacacc acctcttgcc aattacatgc
      481 tatcacatga acactccaaa acatgtcatg cagaaggctt ttgtatgatg tgtacaatgc
      541 aagcacatat tacccaggca ctcagtaatc ctggggacgt tattaaacca atgtttgtca
      601 tcaatgagat gcggcgtata gctaggcact tccgttttgg aaaccaagaa gatgcccatg
      661 aattccttca atacactgtt gatgctatgc agaaagcatg cttgaatggc agcaataaat
      721 tagacagaca cacccaggcc accactcttg tttgtcagat atttggagga tacctaagat
      781 ctagagtcaa atgtttaaat tgcaagggcg tttcagatac ttttgatcca tatcttgata
      841 taacattgga gataaaggct gctcagagtg tcaacaaggc attggagcag tttgtgaagc
      901 cggaacagct tgatggagaa aactcgtaca agtgcagcaa gtgtaaaaag atggttccag
      961 cttcaaagag gttcactatc catagatcct ctaatgttct tacactttct ctgaaacgtt
     1021 ttgcaaattt taccggtgga aaaattgcta aggatgtgaa ataccctgag tatcttgata
     1081 ttcggccata tatgtctcaa cccaacggag agccaattgt ctacgtcttg tatgcagtgc
     1141 tggtccacac tggttttaat tgccatgctg gccattactt ctgctacata aaagctagca
     1201 atggcctctg gtatcaaatg aatgactcca ttgtatctac cagtgatatt agatcggtac
     1261 tcagccaaca agcctatgtg ctcttttata tcaggtccca tgatgtgaaa aatggaggtg
     1321 aacttactca tcccacccat agccccggcc agtcctctcc ccgccccgtc atcagtcagc
     1381 gggttgtcac caacaaacag gctgcgccag gctttatcgg accacagctt ccctctcaca
     1441 tgataaagaa tccacctcac ttaaatggga ctggaccatt gaaagacacg ccaagcagtt
     1501 ccatgtcgag tcctaacggg aattccagtg tcaacagggc tagtcctgtt aatgcttcag
     1561 cttctgtcca aaactggtca gttaataggt cctcagtgat cccagaacat cctaagaaac
     1621 aaaaaattac aatcagtatt cacaacaagt tgcctgttcg ccagtgtcag tctcaaccta
     1681 accttcatag taattctttg gagaacccta ccaagcccgt tccctcttct accattacca
     1741 attctgcagt acagtctacc tcgaacgcat ctacgatgtc agtttctagt aaagtaacaa
     1801 aaccgatccc ccgcagtgaa tcctgctccc agcccgtgat gaatggcaaa tccaagctga
     1861 actccagcgt gctggtgccc tatggcgccg agtcctctga ggactctgac gaggagtcaa
     1921 aggggctggg caaggagaat gggattggta cgattgtgag ctcccactct cccggccaag
     1981 atgccgaaga tgaggaggcc actccgcacg agcttcaaga acccatgacc ctaaacggtg
     2041 ctaatagtgc agacagcgac agtgacccga aagaaaacgg cctagcgcct gatggtgcca
     2101 gctgccaagg ccagcctgcc ctgcactcag aaaatccctt tgctaaggca aacggtcttc
     2161 ctggaaagtt gatgcctgct cctttgctgt ctctcccaga agacaaaatc ttagagacct
     2221 tcaggcttag caacaaactg aaaggctcga cggatgaaat gagtgcacct ggagcagaga
     2281 ggggccctcc cgaggaccgc gacgccgagc ctcagcctgg cagccccgcc gccgaatccc
     2341 tggaggagcc agatgcggcc gccggcctca gcagcaccaa gaaggctccg ccgccccgcg
     2401 atcccggcac ccccgctacc aaagaaggcg cctgggaggc catggccgtc gcccccgagg
     2461 agcctccgcc cagcgccggc gaggacatcg tgggggacac agcaccccct gacctgtgtg
     2521 atcccgggag cttaacaggc gatgcgagcc cgttgtccca ggacgcaaag gggatgatcg
     2581 cggagggccc gcgggactcg gcgttggcgg aagccccgga agggttgagt ccggctccgc
     2641 ctgcgcggtc ggaggagccc tgcgagcagc cactccttgt tcaccccagc ggggaccacg
     2701 cccgggacgc tcaggaccca tcccagagct tgggcgcacc cgaggccgca gagcggccgc
     2761 cagctcctgt gctggacatg gccccggccg gtcacccgga aggggacgct gagcctagcc
     2821 ccggcgagag ggtcgaggac gccgcggcgc cgaaagcccc aggcccttcc ccagcgaagg
     2881 agaaaatcgg cagcctcaga aaggtggacc gaggccacta ccgcagccgg agagagcgct
     2941 cgtccagcgg ggagcccgcc agagagagca ggagcaagac tgagggccac cgtcaccggc
     3001 ggcgccgcac ctgcccccgg gagcgcgacc gccaggaccg ccacgccccg gagcaccacc
     3061 ccggccacgg cgacaggctc agccctggcg agcgccgctc tctgggcagg tgcagtcacc
     3121 accactcccg acaccggagc ggggtggagc tggactgggt cagacaccac tacaccgagg
     3181 gcgagcgtgg ctggggccgg gagaagttct accccgacag gccgcgctgg gacaggtgcc
     3241 ggtactacca tgacaggtac gccctgtacg ctgcccggga ctggaagccc ttccacggcg
     3301 gccgcgagca cgagcgggcc gggctgcacg agcggccgca caaggaccac aaccggggcc
     3361 gtaggggctg cgagccggcc cgggagaggg agcggcaccg ccccagcagc ccccgcgcag
     3421 gcgcgcccca cgccctcgcc ccgcaccccg accgcttctc ccacgacaga actgcacttg
     3481 tagccggaga caactgtaac ctctctgatc ggtttcacga acacgaaaat ggaaagtccc
     3541 ggaaacggag acacgacagt gtggagaaca gtgacagtca tgttgaaaag aaagcccgga
     3601 ggagcgaaca gaaggatcct ctagaagagc ctaaagcaaa gaagcacaaa aaatcaaaaa
     3661 aaaaaaaaa
//