LOCUS BC060846 3669 bp mRNA linear HUM 25-AUG-2005 DEFINITION Homo sapiens ubiquitin specific peptidase 42, mRNA (cDNA clone IMAGE:30343487), partial cds. ACCESSION BC060846 VERSION BC060846.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3669) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3669) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Stefan Hansson cDNA Library Preparation: Michael Brownstein / Ted Usdin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 133 Row: g Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis, GenomeScan gene prediction, Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..3669 /db_xref="H-InvDB:HIT000260148" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:30343487" /tissue_type="Placenta, normal" /clone_lib="NIH_MGC_147" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..>3669 /gene="USP42" /gene_synonym="FLJ12697" /db_xref="GeneID:84132" CDS 63..>3669 /gene="USP42" /gene_synonym="FLJ12697" /codon_start=1 /product="USP42 protein" /protein_id="AAH60846.2" /db_xref="GeneID:84132" /translation="MTIVDKASESSDPSAYQNQPGSSEAVSPGDMDAGSASWGAVSSL NDVSNHTLSLGPVPGAVVYSSSSVPDKSKPSPQKDQALGDGIAPPQKVLFPSEKICLK WQQTHRVGAGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQ AHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSN KLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKAAQSVNKALEQ FVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKY PEYLDIRPYMSQPNGEPIVYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVS TSDIRSVLSQQAYVLFYIRSHDVKNGGELTHPTHSPGQSSPRPVISQRVVTNKQAAPG FIGPQLPSHMIKNPPHLNGTGPLKDTPSSSMSSPNGNSSVNRASPVNASASVQNWSVN RSSVIPEHPKKQKITISIHNKLPVRQCQSQPNLHSNSLENPTKPVPSSTITNSAVQST SNASTMSVSSKVTKPIPRSESCSQPVMNGKSKLNSSVLVPYGAESSEDSDEESKGLGK ENGIGTIVSSHSPGQDAEDEEATPHELQEPMTLNGANSADSDSDPKENGLAPDGASCQ GQPALHSENPFAKANGLPGKLMPAPLLSLPEDKILETFRLSNKLKGSTDEMSAPGAER GPPEDRDAEPQPGSPAAESLEEPDAAAGLSSTKKAPPPRDPGTPATKEGAWEAMAVAP EEPPPSAGEDIVGDTAPPDLCDPGSLTGDASPLSQDAKGMIAEGPRDSALAEAPEGLS PAPPARSEEPCEQPLLVHPSGDHARDAQDPSQSLGAPEAAERPPAPVLDMAPAGHPEG DAEPSPGERVEDAAAPKAPGPSPAKEKIGSLRKVDRGHYRSRRERSSSGEPARESRSK TEGHRHRRRRTCPRERDRQDRHAPEHHPGHGDRLSPGERRSLGRCSHHHSRHRSGVEL DWVRHHYTEGERGWGREKFYPDRPRWDRCRYYHDRYALYAARDWKPFHGGREHERAGL HERPHKDHNRGRRGCEPARERERHRPSSPRAGAPHALAPHPDRFSHDRTALVAGDNCN LSDRFHEHENGKSRKRRHDSVENSDSHVEKKARRSEQKDPLEEPKAKKHKKSKKKK" BASE COUNT 930 a 1069 c 977 g 693 t ORIGIN 1 gtgtgcggcg gcggcggcgg cggccgaggg ggatggagcg agcgccgagc cggagttgaa 61 caatgaccat agttgacaaa gcttctgaat cttcagaccc atcagcctat cagaatcagc 121 ctggcagctc cgaggcagtc tcacctggag acatggatgc aggttctgcc agctggggtg 181 ctgtgtcttc attgaatgat gtgtcaaatc acacactttc tttaggacca gtacctggtg 241 ctgtagttta ttcgagttca tctgtacctg ataaatcaaa accatcacca caaaaggatc 301 aagccctagg tgatggcatc gctcctccac agaaagttct tttcccatct gagaagattt 361 gtcttaagtg gcaacaaact catagagttg gagctgggct ccagaatttg ggcaatacct 421 gttttgccaa tgcagcactg cagtgtttaa cctacacacc acctcttgcc aattacatgc 481 tatcacatga acactccaaa acatgtcatg cagaaggctt ttgtatgatg tgtacaatgc 541 aagcacatat tacccaggca ctcagtaatc ctggggacgt tattaaacca atgtttgtca 601 tcaatgagat gcggcgtata gctaggcact tccgttttgg aaaccaagaa gatgcccatg 661 aattccttca atacactgtt gatgctatgc agaaagcatg cttgaatggc agcaataaat 721 tagacagaca cacccaggcc accactcttg tttgtcagat atttggagga tacctaagat 781 ctagagtcaa atgtttaaat tgcaagggcg tttcagatac ttttgatcca tatcttgata 841 taacattgga gataaaggct gctcagagtg tcaacaaggc attggagcag tttgtgaagc 901 cggaacagct tgatggagaa aactcgtaca agtgcagcaa gtgtaaaaag atggttccag 961 cttcaaagag gttcactatc catagatcct ctaatgttct tacactttct ctgaaacgtt 1021 ttgcaaattt taccggtgga aaaattgcta aggatgtgaa ataccctgag tatcttgata 1081 ttcggccata tatgtctcaa cccaacggag agccaattgt ctacgtcttg tatgcagtgc 1141 tggtccacac tggttttaat tgccatgctg gccattactt ctgctacata aaagctagca 1201 atggcctctg gtatcaaatg aatgactcca ttgtatctac cagtgatatt agatcggtac 1261 tcagccaaca agcctatgtg ctcttttata tcaggtccca tgatgtgaaa aatggaggtg 1321 aacttactca tcccacccat agccccggcc agtcctctcc ccgccccgtc atcagtcagc 1381 gggttgtcac caacaaacag gctgcgccag gctttatcgg accacagctt ccctctcaca 1441 tgataaagaa tccacctcac ttaaatggga ctggaccatt gaaagacacg ccaagcagtt 1501 ccatgtcgag tcctaacggg aattccagtg tcaacagggc tagtcctgtt aatgcttcag 1561 cttctgtcca aaactggtca gttaataggt cctcagtgat cccagaacat cctaagaaac 1621 aaaaaattac aatcagtatt cacaacaagt tgcctgttcg ccagtgtcag tctcaaccta 1681 accttcatag taattctttg gagaacccta ccaagcccgt tccctcttct accattacca 1741 attctgcagt acagtctacc tcgaacgcat ctacgatgtc agtttctagt aaagtaacaa 1801 aaccgatccc ccgcagtgaa tcctgctccc agcccgtgat gaatggcaaa tccaagctga 1861 actccagcgt gctggtgccc tatggcgccg agtcctctga ggactctgac gaggagtcaa 1921 aggggctggg caaggagaat gggattggta cgattgtgag ctcccactct cccggccaag 1981 atgccgaaga tgaggaggcc actccgcacg agcttcaaga acccatgacc ctaaacggtg 2041 ctaatagtgc agacagcgac agtgacccga aagaaaacgg cctagcgcct gatggtgcca 2101 gctgccaagg ccagcctgcc ctgcactcag aaaatccctt tgctaaggca aacggtcttc 2161 ctggaaagtt gatgcctgct cctttgctgt ctctcccaga agacaaaatc ttagagacct 2221 tcaggcttag caacaaactg aaaggctcga cggatgaaat gagtgcacct ggagcagaga 2281 ggggccctcc cgaggaccgc gacgccgagc ctcagcctgg cagccccgcc gccgaatccc 2341 tggaggagcc agatgcggcc gccggcctca gcagcaccaa gaaggctccg ccgccccgcg 2401 atcccggcac ccccgctacc aaagaaggcg cctgggaggc catggccgtc gcccccgagg 2461 agcctccgcc cagcgccggc gaggacatcg tgggggacac agcaccccct gacctgtgtg 2521 atcccgggag cttaacaggc gatgcgagcc cgttgtccca ggacgcaaag gggatgatcg 2581 cggagggccc gcgggactcg gcgttggcgg aagccccgga agggttgagt ccggctccgc 2641 ctgcgcggtc ggaggagccc tgcgagcagc cactccttgt tcaccccagc ggggaccacg 2701 cccgggacgc tcaggaccca tcccagagct tgggcgcacc cgaggccgca gagcggccgc 2761 cagctcctgt gctggacatg gccccggccg gtcacccgga aggggacgct gagcctagcc 2821 ccggcgagag ggtcgaggac gccgcggcgc cgaaagcccc aggcccttcc ccagcgaagg 2881 agaaaatcgg cagcctcaga aaggtggacc gaggccacta ccgcagccgg agagagcgct 2941 cgtccagcgg ggagcccgcc agagagagca ggagcaagac tgagggccac cgtcaccggc 3001 ggcgccgcac ctgcccccgg gagcgcgacc gccaggaccg ccacgccccg gagcaccacc 3061 ccggccacgg cgacaggctc agccctggcg agcgccgctc tctgggcagg tgcagtcacc 3121 accactcccg acaccggagc ggggtggagc tggactgggt cagacaccac tacaccgagg 3181 gcgagcgtgg ctggggccgg gagaagttct accccgacag gccgcgctgg gacaggtgcc 3241 ggtactacca tgacaggtac gccctgtacg ctgcccggga ctggaagccc ttccacggcg 3301 gccgcgagca cgagcgggcc gggctgcacg agcggccgca caaggaccac aaccggggcc 3361 gtaggggctg cgagccggcc cgggagaggg agcggcaccg ccccagcagc ccccgcgcag 3421 gcgcgcccca cgccctcgcc ccgcaccccg accgcttctc ccacgacaga actgcacttg 3481 tagccggaga caactgtaac ctctctgatc ggtttcacga acacgaaaat ggaaagtccc 3541 ggaaacggag acacgacagt gtggagaaca gtgacagtca tgttgaaaag aaagcccgga 3601 ggagcgaaca gaaggatcct ctagaagagc ctaaagcaaa gaagcacaaa aaatcaaaaa 3661 aaaaaaaaa //