LOCUS BC060801 3245 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens D4, zinc and double PHD fingers, family 3, mRNA (cDNA
clone MGC:71612 IMAGE:5260159), complete cds.
ACCESSION BC060801
VERSION BC060801.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3245)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3245)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: l Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13442997
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..3245
/db_xref="H-InvDB:HIT000260103"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71612 IMAGE:5260159"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3245
/gene="DPF3"
/gene_synonym="CERD4"
/db_xref="GeneID:8110"
/db_xref="HGNC:HGNC:17427"
/db_xref="MIM:601672"
CDS 14..1087
/gene="DPF3"
/gene_synonym="CERD4"
/codon_start=1
/product="DPF3 protein"
/protein_id="AAH60801.1"
/db_xref="GeneID:8110"
/db_xref="HGNC:HGNC:17427"
/db_xref="MIM:601672"
/translation="MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDS
QTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEV
ELPLKKDGFTSESTTLEALLRGEGVEKKVDAREEESIQEIQRVLENDENVEEGNEEED
LEEDIPKRKNRTRGRAHGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYA
HTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSG
RPEELVSCADCGRSAHLGGEGRKEKEAAAAARTTEDLFGSTSESDTSTFRGFDEDDLE
EPRSCRGRRSGRGSPTADKKGSC"
BASE COUNT 900 a 785 c 769 g 791 t
ORIGIN
1 acattgtagc aaaatggcga ctgtcattca caaccccctg aaagcgctcg gggaccagtt
61 ctacaaggaa gccattgagc actgccggag ttacaactca cggctgtgtg cagagcgcag
121 cgtgcgtctt cccttcctgg actcacagac tggggtggcc cagaacaact gctacatctg
181 gatggagaag aggcaccgag gcccaggcct tgccccgggc cagctgtata cataccctgc
241 ccgctgctgg cgcaagaaga gacgactgca cccacctgaa gatccaaaac tgcggctgct
301 ggagataaaa cctgaagtgg agcttcccct gaagaaggat gggttcacct cagagagcac
361 cacgctggaa gccttgctcc gtggcgaggg ggttgagaag aaggtggatg ccagggagga
421 ggaaagcatc caggaaatac agagggtttt ggaaaatgat gaaaatgtag aagaagggaa
481 tgaagaagag gatttggaag aggatattcc caagcgaaag aacaggacta gaggacgggc
541 tcacggctct gcagggggca ggaggaggca cgacgccgcc tctcaggaag accacgacaa
601 accttacgtc tgtgacatct gtggcaagcg ctacaagaac cgaccggggc tcagctacca
661 ctatgctcac actcacctgg ccagcgagga gggggatgaa gctcaagacc aggagactcg
721 gtccccaccc aaccacagaa atgagaacca caggccccag aaaggaccgg atggaacagt
781 cattcccaat aactactgtg acttctgctt ggggggctcc aacatgaaca agaagagtgg
841 gcggcctgaa gagctggtgt cctgcgcaga ctgtggacgc tctgctcatt tgggaggaga
901 aggcaggaag gagaaggagg cagcggccgc agcacgtacc acggaggact tattcggttc
961 cacgtcagaa agtgacacgt caactttccg cggctttgat gaggacgatt tggaagagcc
1021 tcgctcctgt cgaggacgcc gcagtggccg gggttcgccc acagcagata aaaagggcag
1081 ttgctaaacc cacggaacag actctctggg caattagcca tccccctctg actttggtca
1141 ttgtgctggt tctgatatat atttttttta atgaaaggca actttagatt ttccctctat
1201 ccttgctttt tttcccttca cctcccacgt gtccctccat ccctcccccc acccctctgt
1261 tttgggtatg tacaacagaa gcacaaacta ctgaaacaaa acaaaacagc agaatgagcg
1321 ttcttccgag agatggcatc gtgatgcgct atttattttc catagaaata ggaagttaga
1381 cggattgtct cttttctgag gggagggggt ctttttgaca ggagcagagt tgatgtcctc
1441 aattttcata tttattggca aaaggaagag aagaggaact ttgggttgga aacaaagaac
1501 caataacatt aaaacattat tatttatata ttctagctgt tattagaatc agactttttt
1561 tgcgagagag agagagagag agagagaagg gaaatcaaag aaatcgaagc aatatcctgt
1621 ttagaggcaa gccgcccggt ggggagaatt tcctcaatgg gagacggttg cactttctgt
1681 gccccacgga gtttgtggct ccccgcggca gacccctccc tcattctcct ccctgacctt
1741 tccatcttcc tctctgctta cgagaaaatg tcagtagttc cagagaagtc ggggtgccta
1801 tgcctggcct ccctccacac ctgggccctg accagccgcc tcctgggctc ctcctcctcc
1861 gtcagtagag ctgctgtttt gttattgctg gtttttcctc actttcctcc tggcaaagaa
1921 cgacttccaa atgcagggat ggaatataag cagaacgtca tgggctcagc agtgactcca
1981 ccacccgagg ccgaggccgt gcttctggaa gatagaagga gacatcatcg tgtgtttccc
2041 ctcccattgc ccctgttaag aaacgtatca atacccattg gatgatcaag gctaccgtat
2101 ttcttctatt tttttttata gtgcctgcca ggcactttgt tttatgtttc caatagcact
2161 tcctgaaata aaccaaagca acactgctca aggcccctgg ggcgatggag aaggccaccc
2221 acctcactga cagtcccaag aatgaccggc tgcgaggtcc tagtcaaaag tcaacattat
2281 gacctgggga ctccagcatc cttcaagcaa gccatttccg aagaaggtga aaagaagcca
2341 ggatgattgg cacatcctcc tcctcctcct cttcttcctc ttcccttgcc cagccccctc
2401 ctgtgcgtgt gtttcagaca acacaggagc cagcacagga gtggaaaatc ctgcagcgta
2461 actcagctca gcccacagaa gccttgggaa tggcctcagt ttgtgcaata agaagatttt
2521 ttttttcttt ttaaatcttc attatatttt ctttgattgt ctgtgagaaa gtacccaggt
2581 ccgcctggaa ttactctaca gtagaaataa ctgaacacaa acaaactgat ggaaaaaaag
2641 agttaactat tttatttatt tcaatattta aaaggaaaaa agtgctgaca ttgcacagta
2701 tttttgttta aagtacctcc tacttcaaaa gttaagcgca attttgtgaa gacatgaaat
2761 cataagagta cttaatgtaa aataaaagac tgcatattaa ctctaaagaa aaatgcccca
2821 cattttaagt aagaaaataa agatcaactc tgctctctca ggctttttaa aaagccattc
2881 atgtatgtgc tttaggtatt tttatttctg cgagttggat gtggtaagtg aggagtgctc
2941 agtttttttt tcctccttca aaagtctatt gaaagtgttg gtgatgttaa atgattgtgt
3001 gttaagattt gactgaaata acttagccac aaatcagcag tttcccccac cctcattgcc
3061 ccctcacccc aggcaagccc cttttatctg aatgtcagaa gcagcctgcc tcctagttat
3121 catgtctgat gaggtctagc tcaggaagga attccatcta ttgatggaat atatcccctc
3181 aagttcaata gattcgaaca cagagagctt tgtttaaaat aatgcagcca aaaaaaaaaa
3241 aaaaa
//