LOCUS BC060037 2245 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens coiled-coil domain containing 88A, mRNA (cDNA clone
IMAGE:4108973), partial cds.
ACCESSION BC060037
VERSION BC060037.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2245)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2245)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-OCT-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 48 Row: b Column: 16.
FEATURES Location/Qualifiers
source 1..2245
/db_xref="H-InvDB:HIT000260034"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4108973"
/tissue_type="Bone marrow, acute myelogenous leukemia"
/clone_lib="NIH_MGC_55"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..>2245
/gene="CCDC88A"
/gene_synonym="APE"
/gene_synonym="GIRDIN"
/gene_synonym="GIV"
/gene_synonym="GRDN"
/gene_synonym="HkRP1"
/db_xref="GeneID:55704"
/db_xref="HGNC:HGNC:25523"
/db_xref="MIM:609736"
CDS 380..>2245
/gene="CCDC88A"
/gene_synonym="APE"
/gene_synonym="GIRDIN"
/gene_synonym="GIV"
/gene_synonym="GRDN"
/gene_synonym="HkRP1"
/codon_start=1
/product="CCDC88A protein"
/protein_id="AAH60037.1"
/db_xref="GeneID:55704"
/db_xref="HGNC:HGNC:25523"
/db_xref="MIM:609736"
/translation="MENEIFTPLLEQFMTSPLVTWVKTFGPLAAGNGTNLDEYVALVD
GVFLNQVMLQINPKLESQRVNKKVNNDASLRMHNLSILVRQMKFYYQETLQQLIMMSL
PNVLIIGKNPFSEQGTEEVKKLLLLLLGCAVQCQKKEEFIERIQGLDFDTKAAVAAHI
QEVTHNQENVFDLQWMEVTDMSQEDIEPLLKNMALHLKRLIDERDEHSETIIELSEER
DGLHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADAKAKIRRLRQELEEKTEQLLD
CKQELEQMEIELKRLQQENMNLLSDARSARMYRDELDALREKVVRVDKLESEVSRYKE
RLHDIEFYKARVEELKEDNQVLLETKTMLEDQLEGTRARSDKLHELEKENLQLKAKLH
DMEMERDMDRKKIEELMEENMTLEMAQKQSMDESLHLGWELEQISRTSELSEAPQKSL
GHEVNELTSSRLLKLEMENQSLTKTVEELRTTVDSVEGNASKILKMEKENQRLSKKVE
ILENEIVQEKQSLQNCQNLSKDLMKEKAQLEKTIETLRENSERQIKILEQENEHLNQT
VSSLRQRSQISAEARVKDIEKENKILHESIKETSSKLSKIEFEKRQIKKKKKKKKK"
BASE COUNT 774 a 398 c 505 g 568 t
ORIGIN
1 ggggattggg agcagtttcg ctggtctgga tcctccagga gctggacaac cttgacgggc
61 tttttgtctt gggttccagc cccctttccc ttcctcctcc tccagatgcc ttttctctgc
121 ccctcctcgc ccggtacaga catttccagc gcaggctgct gctcgtggtg tccgtcgtcg
181 aagccacttc ttgggatttc ggctcgtttc actctggggt gttttttgag gagggagagt
241 gcccccctcc tccacgatgg gatttttctc ccttgccgaa atggactttc attgatttct
301 acttacttcc acgtttagtg accaattccc taggcgtatt tttgtggtag ttcctttttt
361 caaatacata ctctgtaaaa tggagaacga aatttttact ccccttctgg agcagttcat
421 gaccagccct ttggtcactt gggttaaaac gtttggacct ctggccgcag gaaatgggac
481 caaccttgat gaatatgtgg ctttggtgga tggggtattc ttgaaccagg tcatgctcca
541 aattaatcct aaattggaga gtcagagagt aaataaaaaa gtcaataatg atgcctcact
601 tagaatgcac aatctatcca ttttggtgag acagatgaaa ttttattacc aggagacttt
661 gcagcaattg atcatgatgt cgttgccaaa tgtcttaatc attggcaaaa atcccttttc
721 tgaacaaggc acagaagaag ttaaaaaact gcttttactt ttattgggtt gtgcagttca
781 gtgtcagaaa aaagaggaat ttattgaaag aattcaaggt ttagattttg atacaaaagc
841 agcggttgcc gcacatattc aagaggtaac tcataatcag gaaaatgtgt ttgacctgca
901 atggatggaa gtgactgata tgtcgcagga ggacatagaa ccactcttga aaaatatggc
961 attgcatcta aaaagactta tagatgagag agatgaacat tcagagacta tcatagaact
1021 ctctgaagag cgggatggtc tccattttct accccatgcc tcttcatctg cacagtcacc
1081 ctgtggttct ccaggcatga agcgaacaga aagtcgacaa catctgtcgg tggaactggc
1141 agatgctaaa gccaagataa gaaggcttag gcaggaattg gaggaaaaga ctgagcagtt
1201 gttggattgt aaacaagaac ttgagcaaat ggaaatagaa ctcaaaaggc tgcaacaaga
1261 gaacatgaat ttgctttcgg atgctcgctc tgccagaatg taccgagatg aattagatgc
1321 acttcgagag aaagtagtca gagtcgataa gcttgaaagt gaagtcagca gatataaaga
1381 gagactacat gatattgaat tttataaggc aagagttgag gaattaaaag aagacaatca
1441 agttttatta gaaacaaaaa ccatgttgga agaccaacta gagggaactc gtgctcgttc
1501 tgataaatta catgaattag aaaaagagaa cttacaactg aaagctaaac ttcatgatat
1561 ggaaatggaa cgagatatgg atagaaaaaa gattgaagaa ttaatggaag aaaatatgac
1621 tttggaaatg gcacagaaac aaagtatgga tgaatcatta catcttggct gggaactgga
1681 acagatatcc agaactagtg aactttccga agcaccccag aaatccctgg gccatgaggt
1741 gaatgagttg acatcaagta gattattgaa gctagagatg gaaaatcaaa gtttgacaaa
1801 aaccgtagaa gagcttcgga ctactgtgga ttctgtagaa ggcaatgctt ccaaaatcct
1861 gaaaatggaa aaagaaaatc aaaggctcag taaaaaggtt gagattcttg aaaatgagat
1921 tgttcaagaa aagcaaagtc ttcagaattg tcagaattta agcaaggatc taatgaagga
1981 gaaagctcag cttgaaaaaa caatagaaac actgagagaa aattcagaga gacagattaa
2041 gatactggaa caggaaaatg aacatctgaa tcaaacagtg tcttccttaa ggcagcggtc
2101 ccagataagt gcagaagcaa gagtgaaaga cattgaaaaa gaaaacaaaa ttcttcatga
2161 atctatcaaa gaaacaagta gcaagctaag caagattgaa tttgaaaaaa gacaaatcaa
2221 aaaaaaaaaa aaaaaaaaaa aaaaa
//