LOCUS BC059393 3253 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens oligophrenin 1, mRNA (cDNA clone IMAGE:30344240),
complete cds.
ACCESSION BC059393
VERSION BC059393.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3253)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3253)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Stefan Hansson
cDNA Library Preparation: Michael Brownstein / Ted Usdin
Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 133 Row: g Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4505506
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..3253
/db_xref="H-InvDB:HIT000259993"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:30344240"
/tissue_type="Placenta, normal"
/clone_lib="NIH_MGC_147"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3253
/gene="OPHN1"
/gene_synonym="OPN1"
/db_xref="GeneID:4983"
/db_xref="MIM:300127"
CDS 295..1230
/gene="OPHN1"
/gene_synonym="OPN1"
/codon_start=1
/product="OPHN1 protein"
/protein_id="AAH59393.1"
/db_xref="GeneID:4983"
/db_xref="MIM:300127"
/translation="MGHPPLEFSDCYLDSPDFRERLKCYEQELERTNKFIKDVIKDGN
ALISAMRNYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLNEVENERM
MMVHNASDLLIKPLENFRKEQIGFTKERKKKFEKDGERFYSLLDRHLHLSSKKKESQL
QEADLQVDKERHNFFESSLDYVYQIQEVQESKKFNIVEPVLAFLHSLFISNSLTVELT
QDFLPYKQQLQLSLQNTRNHFSSTREEMEELKKRMKEAPQTCKLPGQPTIEGYLYTQE
KCVWGHRGIHWVSISQELLPLVGCEFWAPLLFIDP"
BASE COUNT 963 a 675 c 728 g 887 t
ORIGIN
1 agagaggctg ttcccagctc cagctctaac ctcgcctaca ccttgggcgg gcccaagtgt
61 cacgtttgca attgctcagg aaggatccgg cccgtctccg gaggcaagtc gggctgcggt
121 ttttgctgct tatctgggaa ggcgatgcct aagggacatg ctgcttgcta ggcagcaccc
181 tgccggaatc cgactgcgat agttagctct ccctggccct gaagccatcg ccggggcgcc
241 tgttctctgt ccggaccagc cagcgctcct caggagtctc actgaaacag aaccatgggt
301 catcccccgc tggagttcag cgactgctac ctggacagcc ccgatttccg cgagaggctc
361 aagtgttatg agcaggaact ggagaggacc aacaaattca tcaaagacgt aatcaaagac
421 ggcaacgcgc ttatcagcgc tatgagaaat tattcttctg ctgttcagaa attttcccag
481 acgctgcagt catttcagtt tgatttcatt ggagacactc tgactgatga tgaaattaac
541 atcgctgaat ccttcaagga atttgctgaa ttgctcaacg aggtagaaaa tgagaggatg
601 atgatggtac acaatgctag tgatttgctg attaaaccct tggaaaattt ccggaaggaa
661 caaataggct tcaccaagga gcggaaaaag aaatttgaaa aggatggtga gaggttttat
721 tctttactgg atcggcactt acacctgtct tcaaaaaaga aagaatctca gttacaagag
781 gcagacctac aggtggacaa ggagaggcac aattttttcg agtcctctct tgattatgtt
841 tatcaaatcc aggaagttca ggagtccaag aagttcaata ttgtggagcc tgtcttggcc
901 tttcttcata gtctgttcat ttctaacagc ctgactgtgg agctcacaca ggatttcctc
961 ccatacaaac aacagctcca actcagttta cagaatacaa gaaatcattt ctccagtacc
1021 cgggaagaga tggaagaact taagaaaagg atgaaagaag ctccccagac atgcaaactt
1081 ccaggacagc caactattga aggctatctc tatacacaag agaaatgtgt gtggggacat
1141 aggggtatcc attgggtttc aataagccag gaactactgc cacttgtcgg ctgtgaattt
1201 tgggcaccct tactgttcat agacccctga tagctaaaat tcccttggaa cgcaggcagg
1261 gaatactgaa aacaaaaaaa aaaaaggaga aactgagagg aagttaaaga tttgtcttac
1321 aaaggctgtg tagtgataag acctaaggtt ttctctgaga ttcaaaatgg gtattatttg
1381 ttctttaatc cttctgatta ttcttttgga aaaaagggaa gtagaggaaa ggaagtagaa
1441 aaataatatt tcttatactt attatgtacc agacatggtg ctaagttcat ttaaaacact
1501 gcctcattta atctttgcaa ccaatttata cccatacaca taaggccact aaggctcaga
1561 gacgtcacca tttgaaagtc acccaactaa caagtgtcag gactaaaatt aaattcaggt
1621 ctatgaaatg ccaaagccca tgatcctact atagtaccct atgtcttcgt ctgcattagg
1681 gtcatatgtt tgctcttttc ttttcttttt ttaagacagg atcttgctct gttgtccagg
1741 ttggagtgca atggcaccat catagctcac tacagcctca tactcctggg ctcaagcagc
1801 cctcctgcct cagcctcctg agtggctgca cctaaaggca cctaccacta cacttggcta
1861 agttttgaat tttttgtaga gacaaggtct cactatgttg ctcaggctca tggatgctct
1921 tatagcactt agtgaacatc atgattccag tgggaaagac agtatctgtt tttcattggt
1981 gactaagtaa agtgggttaa cttgtttagt cactgaatgt tgcagagcat tcaatctttc
2041 ctaattcctc agtaacatta tgcacacctg tatgtgtgat ttgattttat ttgccctttg
2101 aactatgacc caatactccc caaacctgtt attcagtttt tgcccagagt tattatatct
2161 ggggaataaa cagaggacac acacccagag gctgccagta gcaaaaatca ctgtaattca
2221 aaaagcatga cactacggta gtgaaattat cacacttttc tttgcataga gcagtttact
2281 tgtgatgatt ttcaaagatg tgttctccca cttgtcaggt tcatctcttc aactgtgtgt
2341 cgcacaattt ctcgatctca gtgctgttga catttcaggc tggataattt ttagttctgg
2401 gaagtggtcc tgtgtattat agtatattta gaagcatccc tggcctcctc actttgtgct
2461 catagtaatc tccaggtgtg acaacctaaa atgtctctaa tgtattgcca catgtcccct
2521 gggaggccaa attaccccta gttgagaacc actgctgtat gctgtgtgat ccttctgtgc
2581 ttcagtattc tgatttgtca tatgggcata acattgctac tcagttgaat gtatgcttaa
2641 tgagcactgt ttctgccaga tactgtgcaa tgcattgggg acacccttga aaaactgaat
2701 caaccatgat ttctttcacc aagaagtgta aagtgatggg agagatagac aagtatatca
2761 ataattataa tgaaatgtgg tgataactgt atttggggca tatatctaaa ggcttcacaa
2821 agaaagtgat atttgaacta gaacttgaat gatgagtggg agtttgatag gtaaagaaaa
2881 ggaggaatgg ccgggcacag tggctcatgc ctgtaatccc agcactttgg gaggctgaga
2941 cggcagatca ctggaggtca ggagtttgag accagcctgg ccaacatggt gaaaccccgt
3001 ctctactaaa aatacaaaaa ttagctggat gtggtgatgc ttgcctgtaa tcctagctac
3061 ttgggagact gaggcagggg aatgacttga acctgggagg tggagatttt actcagccga
3121 gatggtgcca ttacactcca gcctgggtga cagagtgaga ctctgtctca aaaatgaata
3181 aaagaaagaa agaaagaatg aaagaaagaa aagaaaagaa agaaaggaaa gaaaaaggaa
3241 aaaaaaaaaa aaa
//