LOCUS BC058288 2050 bp mRNA linear HUM 08-SEP-2006
DEFINITION Homo sapiens coiled-coil domain containing 40, mRNA (cDNA clone
IMAGE:4737779), complete cds.
ACCESSION BC058288
VERSION BC058288.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2050)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2050)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-SEP-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 48 Row: f Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: GenomeScan gene prediction
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2050
/db_xref="H-InvDB:HIT000259844"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4737779"
/tissue_type="Prostate, adenocarcinoma."
/clone_lib="NIH_MGC_60"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2050
/gene="CCDC40"
/gene_synonym="FLJ20753"
/gene_synonym="FLJ32021"
/gene_synonym="KIAA1640"
/db_xref="GeneID:55036"
/db_xref="HGNC:HGNC:26090"
CDS 10..1446
/gene="CCDC40"
/gene_synonym="FLJ20753"
/gene_synonym="FLJ32021"
/gene_synonym="KIAA1640"
/codon_start=1
/product="CCDC40 protein"
/protein_id="AAH58288.1"
/db_xref="GeneID:55036"
/db_xref="HGNC:HGNC:26090"
/translation="MAEPGGAAGRSHPEDGSASEGEKEGNNESHMVSPPEKDDGQKGE
EAVGSTEHPEEVTTQAEAAIEEGEVETEGEAAVEGEEEAVSYGDAESEEEYYYTETSS
PEGQISAADTTYPYFSPPQELPGEEAYDSVSGEAGLQGFQQEATGPPESRERRVTSPE
PSHGVLGPSEQMGQVTSGPAVGRLTGSTEEPQGQVLPMGVQHRFRLSHGSDIESSDLE
EFVSQEPVIPPGVPDAHPREGDLPVFQDQIQQPSTEEGAMAERVESEGSDEEAEDEGS
QLVVLDPDHPLMVRFQAALKNYLNRQIEKLKLDLQELVVATKQSRAQRQELGVNLYEV
QQHLVHLQKLLEKSHDRHAMASSERRQKEEELQAARALYTKTCAAANEERKKLAALQT
EMENLALHLFYMQNIDQDMRDDIRVMTQVVKKAETERIRAEIEKKKQGVGDTGAAFIP
KTTQGDQVSGRGKKKPGTVVARVSPAEL"
BASE COUNT 580 a 518 c 622 g 330 t
ORIGIN
1 gggggggaaa tggcggaacc gggcggcgcg gcgggccggt cccatccgga agatggatcg
61 gcttctgagg gagagaagga agggaataat gaaagccaca tggtgtcacc accagagaag
121 gatgatggcc agaaaggtga agaagctgtc ggtagcacag agcatcctga ggaagtcaca
181 acccaagcgg aagctgcaat tgaagagggg gaggtcgaga cagaagggga agcagcagtg
241 gaaggggaag aggaggctgt gtcctatgga gatgctgaaa gcgaagagga atattactat
301 acagaaactt catccccgga agggcaaatc agtgctgcag atacgactta cccgtatttc
361 agtcctcctc aggaactgcc tggagaggag gcatacgata gtgttagcgg ggaggctggt
421 ctccaaggct tccagcaaga ggccaccggt ccaccagaat ccagagaaag gagggtcacc
481 tccccagagc catcccacgg agtcttaggc ccgtcggagc aaatgggcca ggtcacctct
541 gggccagcag tgggcagatt gacaggatcc acagaggagc cccaggggca ggtgctccca
601 atgggcgtcc agcaccgctt ccggctgagc cacgggagcg acatcgagtc ctcagacctg
661 gaggagttcg tctcgcagga gccagtgatc cccccagggg tgcccgatgc ccaccccagg
721 gaaggagacc tgccagtgtt ccaggaccag atccagcagc ccagcaccga ggagggggcc
781 atggcagaga gagtggagtc cgaggggagt gacgaggaag cagaagacga agggtcccag
841 ctggtggttt tggacccaga ccaccccctg atggtaagat ttcaggctgc cctgaagaac
901 tacctgaacc gacagatcga aaagttgaag ctggacctcc aagagctggt tgtggctacc
961 aagcagagcc gagcccagcg gcaggagctg ggggtgaatc tctatgaggt gcagcagcac
1021 ctggtacacc tgcagaagct gctggagaag agtcacgacc gccacgcaat ggcctcgagc
1081 gagcgcaggc agaaggagga ggagctgcag gccgcccgcg ctctctacac caagacctgc
1141 gcagccgcca acgaggagcg caaaaagttg gcggctctgc agactgagat ggagaacttg
1201 gccctgcatc tcttctacat gcagaacatc gaccaggaca tgcgtgacga catccgcgtg
1261 atgacacaag tggtaaagaa ggccgagacg gagaggatcc gggcagaaat cgagaagaaa
1321 aagcagggcg ttggagacac aggtgctgcc ttcattccta aaaccaccca gggtgaccag
1381 gtctcgggac gcggaaagaa aaagccgggc actgtggtgg cacgtgtctc acccgctgag
1441 ctttaacttc ccctccacct ttcgtagtct ccaccccttg tgcccagcac agagcctggc
1501 atacagcaag cgctcaagaa aggctggacc aaggaatgag ggtctggctg gccccacagc
1561 acccgcagcc aggcagccag cagcagtcac acaaccagga gatgcttttc cttttgggtg
1621 ctgtgattaa agaaacaaaa tgaaaccatt ttgtttttaa aagtttttag accaaaacat
1681 tttcaaatga ataatattgg attaaccata ctcatttctg gccaggcgca gtggctcgca
1741 cctgtaatcc caacattttg ggaggctgag acgggtgggt cacgaggcca ggagttcaag
1801 accagcctgg ccaagatggt gaaaccccgt ctctactaaa aatacaaaaa ttagccaggc
1861 atggtgtggg cgcctgtaat ccccgctact cgggagggtg agacagagaa ctgcttgaat
1921 tgcggaggtt gtagtgagcc gagatcacgc cactgcactc tagcctggga gacagagcaa
1981 gactctgtct caaaaaaaat aaaaataata ataacaaaaa aaaaaaaaaa aaaaaaaaaa
2041 aaaaacatgt
//