LOCUS BC058288 2050 bp mRNA linear HUM 08-SEP-2006 DEFINITION Homo sapiens coiled-coil domain containing 40, mRNA (cDNA clone IMAGE:4737779), complete cds. ACCESSION BC058288 VERSION BC058288.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2050) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2050) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (15-SEP-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 48 Row: f Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: GenomeScan gene prediction This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..2050 /db_xref="H-InvDB:HIT000259844" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4737779" /tissue_type="Prostate, adenocarcinoma." /clone_lib="NIH_MGC_60" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..2050 /gene="CCDC40" /gene_synonym="FLJ20753" /gene_synonym="FLJ32021" /gene_synonym="KIAA1640" /db_xref="GeneID:55036" /db_xref="HGNC:HGNC:26090" CDS 10..1446 /gene="CCDC40" /gene_synonym="FLJ20753" /gene_synonym="FLJ32021" /gene_synonym="KIAA1640" /codon_start=1 /product="CCDC40 protein" /protein_id="AAH58288.1" /db_xref="GeneID:55036" /db_xref="HGNC:HGNC:26090" /translation="MAEPGGAAGRSHPEDGSASEGEKEGNNESHMVSPPEKDDGQKGE EAVGSTEHPEEVTTQAEAAIEEGEVETEGEAAVEGEEEAVSYGDAESEEEYYYTETSS PEGQISAADTTYPYFSPPQELPGEEAYDSVSGEAGLQGFQQEATGPPESRERRVTSPE PSHGVLGPSEQMGQVTSGPAVGRLTGSTEEPQGQVLPMGVQHRFRLSHGSDIESSDLE EFVSQEPVIPPGVPDAHPREGDLPVFQDQIQQPSTEEGAMAERVESEGSDEEAEDEGS QLVVLDPDHPLMVRFQAALKNYLNRQIEKLKLDLQELVVATKQSRAQRQELGVNLYEV QQHLVHLQKLLEKSHDRHAMASSERRQKEEELQAARALYTKTCAAANEERKKLAALQT EMENLALHLFYMQNIDQDMRDDIRVMTQVVKKAETERIRAEIEKKKQGVGDTGAAFIP KTTQGDQVSGRGKKKPGTVVARVSPAEL" BASE COUNT 580 a 518 c 622 g 330 t ORIGIN 1 gggggggaaa tggcggaacc gggcggcgcg gcgggccggt cccatccgga agatggatcg 61 gcttctgagg gagagaagga agggaataat gaaagccaca tggtgtcacc accagagaag 121 gatgatggcc agaaaggtga agaagctgtc ggtagcacag agcatcctga ggaagtcaca 181 acccaagcgg aagctgcaat tgaagagggg gaggtcgaga cagaagggga agcagcagtg 241 gaaggggaag aggaggctgt gtcctatgga gatgctgaaa gcgaagagga atattactat 301 acagaaactt catccccgga agggcaaatc agtgctgcag atacgactta cccgtatttc 361 agtcctcctc aggaactgcc tggagaggag gcatacgata gtgttagcgg ggaggctggt 421 ctccaaggct tccagcaaga ggccaccggt ccaccagaat ccagagaaag gagggtcacc 481 tccccagagc catcccacgg agtcttaggc ccgtcggagc aaatgggcca ggtcacctct 541 gggccagcag tgggcagatt gacaggatcc acagaggagc cccaggggca ggtgctccca 601 atgggcgtcc agcaccgctt ccggctgagc cacgggagcg acatcgagtc ctcagacctg 661 gaggagttcg tctcgcagga gccagtgatc cccccagggg tgcccgatgc ccaccccagg 721 gaaggagacc tgccagtgtt ccaggaccag atccagcagc ccagcaccga ggagggggcc 781 atggcagaga gagtggagtc cgaggggagt gacgaggaag cagaagacga agggtcccag 841 ctggtggttt tggacccaga ccaccccctg atggtaagat ttcaggctgc cctgaagaac 901 tacctgaacc gacagatcga aaagttgaag ctggacctcc aagagctggt tgtggctacc 961 aagcagagcc gagcccagcg gcaggagctg ggggtgaatc tctatgaggt gcagcagcac 1021 ctggtacacc tgcagaagct gctggagaag agtcacgacc gccacgcaat ggcctcgagc 1081 gagcgcaggc agaaggagga ggagctgcag gccgcccgcg ctctctacac caagacctgc 1141 gcagccgcca acgaggagcg caaaaagttg gcggctctgc agactgagat ggagaacttg 1201 gccctgcatc tcttctacat gcagaacatc gaccaggaca tgcgtgacga catccgcgtg 1261 atgacacaag tggtaaagaa ggccgagacg gagaggatcc gggcagaaat cgagaagaaa 1321 aagcagggcg ttggagacac aggtgctgcc ttcattccta aaaccaccca gggtgaccag 1381 gtctcgggac gcggaaagaa aaagccgggc actgtggtgg cacgtgtctc acccgctgag 1441 ctttaacttc ccctccacct ttcgtagtct ccaccccttg tgcccagcac agagcctggc 1501 atacagcaag cgctcaagaa aggctggacc aaggaatgag ggtctggctg gccccacagc 1561 acccgcagcc aggcagccag cagcagtcac acaaccagga gatgcttttc cttttgggtg 1621 ctgtgattaa agaaacaaaa tgaaaccatt ttgtttttaa aagtttttag accaaaacat 1681 tttcaaatga ataatattgg attaaccata ctcatttctg gccaggcgca gtggctcgca 1741 cctgtaatcc caacattttg ggaggctgag acgggtgggt cacgaggcca ggagttcaag 1801 accagcctgg ccaagatggt gaaaccccgt ctctactaaa aatacaaaaa ttagccaggc 1861 atggtgtggg cgcctgtaat ccccgctact cgggagggtg agacagagaa ctgcttgaat 1921 tgcggaggtt gtagtgagcc gagatcacgc cactgcactc tagcctggga gacagagcaa 1981 gactctgtct caaaaaaaat aaaaataata ataacaaaaa aaaaaaaaaa aaaaaaaaaa 2041 aaaaacatgt //