LOCUS BC057394 6904 bp mRNA linear HUM 24-JUL-2018 DEFINITION Homo sapiens Rho guanine nucleotide exchange factor (GEF) 11, mRNA (cDNA clone MGC:60344 IMAGE:6148684), complete cds. ACCESSION BC057394 VERSION BC057394.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6904) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 6904) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-SEP-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov REFERENCE 3 (bases 1 to 6904) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (24-JUL-2018) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK Sequence update by database staff to remove vector contamination COMMENT On Jul 24, 2018 this sequence version replaced BC057394.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 110 Row: k Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 38026933. FEATURES Location/Qualifiers source 1..6904 /db_xref="H-InvDB:HIT000259693" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:60344 IMAGE:6148684" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..6904 /gene="ARHGEF11" /gene_synonym="GTRAP48" /gene_synonym="KIAA0380" /gene_synonym="PDZ-RHOGEF" /db_xref="GeneID:9826" /db_xref="HGNC:HGNC:14580" /db_xref="MIM:605708" CDS 1041..5729 /gene="ARHGEF11" /gene_synonym="GTRAP48" /gene_synonym="KIAA0380" /gene_synonym="PDZ-RHOGEF" /codon_start=1 /product="Rho guanine nucleotide exchange factor (GEF) 11" /protein_id="AAH57394.1" /db_xref="GeneID:9826" /db_xref="HGNC:HGNC:14580" /db_xref="MIM:605708" /translation="MSVRLPQSIDRLSSLSSLGDSAPERKSPSHHRQPSDASETTGLV QRCVIIQKDQHGFGFTVSGDRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSH LEVVKLIKSGAYVALTLLGSSPSSMGISGLQQDPSPAGAPRITSVIPSPPPPPPLPPP QRITGPKPLQDPEVQKHATQILRNMLRQEEKELQRICEVYSRNPASLLEEQIEGARRR VTQLQLKIQQETGGSVDILPLYGDTSQRPSEGRLSLDSQEGDSGLDSGTERFPSLSES LMNRNSVLSDPGLDSPRTSPVIMARVAQHHRRQGSDAAVPSTGDQGVDQSPKPLIIGP EEDYDPGYFNNESDIIFQDLEKLKSRPAHLGVFLRYIFSQADPSPLLFYLCAEVYQQA SPKDSRSLGKDIWNIFLEKNAPLRVKIPEMLQAEIDSRLRNSEDARGVLCEAQEAAMP EIQEQIHDYRTKRTLGLGSLYGENDLLDLDGDPLRERQVAEKQLAALGDILSKYEEDR SAPMDFALNTYMSHAGIRLREARPSNTAEKAQSAPDKDKWLPFFPKTKKSSNSKKEKD ALEDKKRNPILKYIGKPKSSSQSTFHIPLSPVEVKPGNVRNIIQHFENNQQYDAPEPG TQRLSTGSFPEDLLESDSSRSEIRLGRSESLKGREEMKRSRKAENVPRSRSDVDMDAA AEATRLHQSASSSTSSLSTRSLENPTPPFTPKMGRRSIESPSLGFCTDTLLPHLLEDD LGQLSDLEPEPDAQNWQHTVGKDVVAGLTQREIDRQEVINELFVTEASHLRTLRVLDL IFYQRMKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGPIIKEISDLMLAR FDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDL IISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHR LEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLE DLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATDKRAFFIICT SKLGPPQIYELVALTSSDKNTWMELLEEAVRNATRHPGAAPMPVHPPPPGPREPAQQG PTPSRVELDDSDVFHGEPEPEELPGGTGSQQRVQGKHQVLLEDPEQEGSAEEEELGVL PCPSTSLDGENRGIRTRNPIHLAFPGPLFMEGLADSALEDVENLRHLILWSLLPGHTM ETQAAQEPEDDLTPTPSVISVTSHPWDPGSPGQAPPGGEGDNTQLAGLEGERPEQEDM GLCSLEHLPPRTRNSGIWESPELDRNLAEDASSTEAAGGYKVVRKAEVAGSKVVPALP ESGQSEPGPPEVEGGTKATGNCFYVSMPSGPPDSSTDHSEAPMSPPQPDSLPAGQTEP QPQLQGGNDDPRRPSRSPPSLALRDVGMIFHTIEQLTLKLNRLKDMELAHRELLKSLG GESSGGTTPVGSFHTEAARWTDGSLSPPAKEPLASDSRNSHELGPCPEDGSDAPLEDS TADAAASPGP" BASE COUNT 1717 a 1883 c 1777 g 1527 t ORIGIN 1 agcgaaatct ccgtttcatg gaggctgagg caagagaaaa tttcggagcc tggatgtgga 61 ggagcccaac agcagaacta actcaggaaa ttgtctttca gaaaaaggcc gaacgtaggc 121 tgggtctgag aatcaggctg gggtaggtgg aggaacctgc aagtttaaag gaaaaagaaa 181 aggagagaat attttcagtg attatctctg gtttgttatc attactacca tcttaaaggt 241 aaaaagcatt gcatttcagg tgttctttga tttttatttt attttttttt ttggtgcaat 301 tggctcattt aagaatttca aaacatttaa tgtaaaagct tttttttttt taaggaagtc 361 cataaatttt ggttcccagg gttgcactgg acttggaagg agtgctgttg tgtacatact 421 attgtatggt tttatttatt attttactgt acaaatcagc tgaaagaatt tttccaagtg 481 ccatttcgga tttattaatc cttttttttt tcctttcctc aaagatattt gctgttgtca 541 tattaagcat tggagactag aaaattactt tccccctttg agctagaggg tctcttgcca 601 acagaaggac agctgagaaa gctggattta aaggatggtt ttatctgtac tttgcagtta 661 acagtgatat tttgaaggca catttttctg tgattcattt ttttttggcc atagtgctaa 721 ccttgaagag attcgtggct gggtttttgg tttctgagaa ggtcgtagtt tttcctcttt 781 tccttttttt ttcttttttc ttttcttttc ttttttttta aagcggggga ggggaagagg 841 ggctgagaaa ggaaatcatg ttcactggta gaagtagagt ggagcatcag ttaccagggt 901 cctgagagct ggaggagaaa ggattctatc ttcaagttgg gaggccctcc tctcaccttg 961 ctcaaaaatt gcaagcgatt caatcctgat caagacacca aagctacagg attctggaac 1021 cgtggagaca ccgagaaacc atgagtgtaa ggttacccca gagtatagac aggttaagta 1081 gcctgtcttc tctgggagat tctgcaccag agcgcaagtc cccttcccac catcgccagc 1141 cttcggatgc ctctgagaca acaggtctcg ttcaacgctg tgtcattatc caaaaggacc 1201 agcatggctt cggcttcaca gtcagtgggg atcgcattgt tctggtgcag tctgtgcggc 1261 ctggaggtgc agccatgaag gccggtgtga aagagggcga ccggatcatc aaagtcaacg 1321 gcaccatggt gaccaatagc tcacacctgg aagtggtaaa gctgatcaaa tctggcgcct 1381 atgtcgcact caccctcctg ggctcttcac cttcatccat gggcatctct gggctccagc 1441 aggacccatc cccagcagga gctccccgaa tcacgtcagt gatcccctca ccaccacctc 1501 ctccacctct accacctcca caacgcatca caggacccaa acctctgcag gatcccgaag 1561 ttcaaaaaca tgccacccag atcctcagga atatgctgag gcaggaagaa aaagaattac 1621 agcgtatctg tgaggtctat agccggaacc ccgccagcct actggaagag cagatcgaag 1681 gtgcccggcg gcgagtcact cagttacagc tgaagatcca gcaggagact ggtggctcag 1741 tggacatact tccactatat ggtgacacca gccagagacc atcagaaggc cggctctctc 1801 tggattccca ggagggggac agtggcttgg actctgggac agaacgcttt ccttccctca 1861 gtgagtcatt gatgaatcgg aactcggtac tgtcagaccc tgggctagac agtcctcgaa 1921 cctcccctgt gatcatggcc agggtggccc agcaccacag gcggcagggc tcggatgcag 1981 cagtcccctc aaccggtgac cagggtgtag atcaaagccc aaagccttta attattggcc 2041 cagaggaaga ctatgacccg ggttatttca acaacgagag cgacatcata ttccaggatc 2101 tggagaaact gaagtctcgg ccagctcacc tgggggtttt tctacgttac atcttctctc 2161 aggcggaccc cagtccactg cttttttacc tgtgtgcaga agtttatcag caggcaagcc 2221 ccaaggattc ccgaagcttg gggaaagaca tctggaatat tttcctggag aaaaatgcgc 2281 ctctgagagt gaagatccct gagatgctac aggctgaaat tgactcgcgc ctgcggaaca 2341 gcgaagatgc ccgtggtgtt ctctgtgaag ctcaagaggc agccatgcct gagatccaag 2401 agcagatcca cgactacaga acgaagcgca cactggggct gggcagcctg tatggtgaaa 2461 atgacctgct ggacctggat ggggaccctc tccgagagcg ccaagtggct gagaagcagc 2521 tggctgccct tggagatatt ttgtccaagt atgaggaaga caggagcgcc cccatggact 2581 tcgccctcaa tacctacatg agccatgctg ggatccgtct tcgagaggca cgaccttcca 2641 acacagctga aaaggcccag tctgctcctg acaaggacaa gtggctaccg ttcttcccta 2701 agaccaagaa gagcagcaat tccaagaaag aaaaggatgc cttggaggac aagaagcgaa 2761 accctatcct caaatacatt gggaagccca aaagctcttc tcaaagcaca tttcatattc 2821 ccttgtcccc tgtggaagtc aaaccaggca atgtgaggaa catcattcag cactttgaga 2881 acaaccagca gtatgatgcc ccagaacctg ggacacaacg actctcgacc ggaagctttc 2941 ctgaggacct gctggagagt gacagttcac gctcagagat tcgcctgggc cgctctgaaa 3001 gcctcaaggg ccgggaagag atgaaacggt ctcgaaaggc agagaacgtg ccccgctctc 3061 gcagtgatgt tgacatggat gctgctgcgg aggctactcg cctgcaccag tcagcctcgt 3121 cctctacctc cagcctctcc accaggtctc ttgagaaccc aacccctcca ttcactccca 3181 aaatgggccg caggagcatt gagtccccca gtttggggtt ctgcacagat accctccttc 3241 cccacctcct agaggatgat ctgggccagc tgtctgacct ggagccagag ccagatgccc 3301 aaaattggca gcatacagtg ggcaaggatg tggtggctgg gctaacccag cgggagattg 3361 accggcaaga ggtcatcaat gagctgtttg tgactgaagc ttcccacctg cgcacactcc 3421 gggtcctgga cctgatcttc taccagcgaa tgaagaagga gaacctgatg ccccgggagg 3481 agctggcccg gctcttcccg aacctgcctg aactcataga gattcacaat tcctggtgtg 3541 aagccatgaa gaagctccgg gaggaaggcc ccatcatcaa agagatcagt gacctcatgc 3601 tggcccggtt tgatggccct gcccgagagg aactccagca agtggctgca cagttctgtt 3661 cctatcagtc aatagcccta gagctaatca agaccaagca acgcaaggag agtcgattcc 3721 agctcttcat gcaggaggct gagagccacc ctcagtgtcg gcggctgcag ctgagagacc 3781 tcatcatctc tgagatgcag cggctcacca agtacccgct gctgctggag agcatcatca 3841 agcacacaga gggtggcacc tctgagcatg agaagctgtg ccgggcccgg gaccagtgcc 3901 gggagattct caagtatgtg aatgaagcgg taaaacaaac agagaaccgc caccgtttag 3961 agggctacca gaaacgcctg gatgccaccg ccctggagag ggccagcaac cccctggcag 4021 cagagttcaa gagcctggat cttacaacca gaaaaatgat ccatgaggga cccctgacct 4081 ggaggatcag caaggataag accttggacc tccacgtgct gctgctggag gacctcctag 4141 tgctgctaca gaaacaggat gagaagctat tgctgaagtg ccacagcaag actgctgtgg 4201 gctcctcaga cagcaagcag accttcagcc ccgtgctcaa gctcaatgct gtgctcatcc 4261 gctctgtggc cacagataaa cgggccttct tcatcatctg cacctccaag ctgggcccac 4321 cccagatcta tgagctggtt gcattgacgt catcagacaa gaacacatgg atggagctct 4381 tagaagaggc cgtgcggaat gccaccaggc accccggagc tgccccaatg cccgtccatc 4441 ctccaccccc aggtccccgg gagccagccc agcagggccc cacacccagc agggtagaac 4501 tggatgactc agacgtgttc catggtgaac ctgaacctga ggagctgcct ggaggcactg 4561 ggtcccagca gagggtccaa gggaagcacc aggtcctgct agaggaccct gagcaggagg 4621 gcagtgcaga ggaagaggaa ctgggtgtcc tgccttgccc ttccacatcc ctggatggag 4681 agaacagggg catcaggaca aggaacccca tccacttggc cttcccaggc cctctgttca 4741 tggaagggct cgctgactcc gctctggaag atgtggagaa cctgcgacat ctgatcctgt 4801 ggagcctgct gccaggtcac accatggaaa ctcaggctgc ccaggagccc gaggacgacc 4861 tgacacccac accttctgtc atcagcgtca cctctcaccc ctgggaccca ggctccccag 4921 ggcaagcacc ccctgggggt gaaggggaca acacccagct tgcagggctg gagggggaac 4981 ggccagagca ggaagacatg ggtctctgtt ctctggaaca cctaccccca aggaccagaa 5041 attctgggat atgggagtct ccagaactgg acaggaatct ggctgaagat gcttcaagca 5101 cagaggcagc aggaggttac aaagttgtga gaaaagctga ggtggcaggc agcaaggttg 5161 tccctgcact accagagagt ggccagtcag agcctgggcc acctgaagtg gaaggcggaa 5221 caaaggctac ggggaactgc ttttatgtca gcatgccatc aggacccccg gactcaagca 5281 ccgaccactc agaggcaccc atgagccccc ctcagcctga cagcctccct gcagggcaga 5341 cagagcctca gcctcagctg cagggaggca acgatgatcc aagacgcccc agccgctctc 5401 ctccaagcct ggccctcagg gacgtgggca tgatcttcca taccattgag cagctcactc 5461 tcaagctcaa caggctcaag gatatggagc tggcccacag agagctgctc aagtcccttg 5521 ggggagagtc atctggtggc accacgcctg tgggcagttt ccacacagaa gcagctagat 5581 ggacagatgg ctccctctca cctcccgcta aggagcccct agcttctgac tccaggaaca 5641 gccatgaact ggggccctgc cctgaggatg gctctgacgc ccccctggaa gacagcacag 5701 cagacgcagc cgcgtcacca ggaccataac cgtacaaacc accaaatcct ctgcgtcccc 5761 actcctcctt cagggactgg cctgagaccg gggcacaggg taggggggat cccaacactc 5821 ctccctgtgg aggaggcagt tagggaaact aggatccagc caaggcccgg ggggagaccc 5881 gcatgttgct tggtctgctc aagtcggagt caggtttcag tgtcttttcc ctcccttagc 5941 ccaaccctcc aaggcctcat gtctcctaag catgctgact gcatccgaaa ggcccccact 6001 caccatggtc tgccctcacc ccacatatgt gtgtacacgc gcacgcctgt atgtgcgctg 6061 ccctcagaca tgcaagtgaa aggaggaggc ttctgtgtaa atgcactttc ttcctcccct 6121 ctttctccat aagaccccag gcagaggtgg gtgcctcccc tcccctcttt gtcactttgg 6181 tttcctataa atatgtatgt atcgtatgtg catctttgct attgtaaata actttgacct 6241 tttttgttcc tgttcctgaa gtgctggagg cagttatgga aggagctgct tagggaagag 6301 gggtttcact tgtatctcct tagttaacaa cccagttcca ggatcgagcc taaagcggga 6361 gccaggcctg agtgttcctg tccctgtgag tgggaaggtc ttctggctcc ccatcccacc 6421 tggctccaga gcctgccctc cacagcttgc tgccaagcta ctccctccct ccctggactt 6481 ctcatcttca caagatgggg atcatggggg tttcttaccc cacctatgtc cccctcttcc 6541 ccaccctgtc cctgtagaaa accagtgaag caggtacgga gctgaggact gggccccagg 6601 aggtggggac aggggtctga atgccgagtc cctgaattca cccaggacca tccaaggggc 6661 caccgcagca ttggccccat caccacgtcc tcacccaact ctccctgatg aatagaatat 6721 acacactgtg ctaggtgtat atatacatat atatatatat aaatatatat ataatatata 6781 aaatatagat atggaaatga ctgttctgct gttaagataa tgtatactct tttattttct 6841 tcctttcatg gttaagattt tttttttaag aaaagttaaa tatccttcaa aaaaaaaaaa 6901 aaaa //