LOCUS BC056757 2155 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier family 6, member 18, mRNA (cDNA clone
MGC:50843 IMAGE:5758770), complete cds.
ACCESSION BC056757
VERSION BC056757.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2155)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2155)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 89 Row: i Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32699071.
FEATURES Location/Qualifiers
source 1..2155
/db_xref="H-InvDB:HIT000259584"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:50843 IMAGE:5758770"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2155
/gene="SLC6A18"
/gene_synonym="FLJ31236"
/gene_synonym="Xtrp2"
/db_xref="GeneID:348932"
/db_xref="HGNC:HGNC:26441"
CDS 82..1968
/gene="SLC6A18"
/gene_synonym="FLJ31236"
/gene_synonym="Xtrp2"
/codon_start=1
/product="solute carrier family 6, member 18"
/protein_id="AAH56757.1"
/db_xref="GeneID:348932"
/db_xref="HGNC:HGNC:26441"
/translation="MAHAPEPDPAACDLGDERPKWDNKAQYLLSCTGFAVGLGNIWRF
PYLCQTYGGGAFLIPYVIALVFEGIPIFHVELAIGQRLRKGSVGVWTAISPYLSGVGL
GCVTLSFLISLYYNTIVAWVLWYLLNSFQHPLPWSSCPPDLNRTGFVEECQGSSAVSY
FWYRQTLNITADINDSGSIQWWLLICLAASWAVVYMCVIRGIETTGKVIYFTALFPYL
VLTIFLIRGLTLPGATKGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFA
SYNSPRNDCQKDAVVIALVNRMTSLYASIAVFSVLGFKATNDYEHCLDRNILSLINDF
DFPEQSISRDDYPAVLMHLNATWPKRVAQLPLKACLLEDFLDKSASGPGLAFVVFTET
DLHMPGAPVWAMLFFGMLFTLGLSTMFGTVEAVITPLLDVGVLPRWVPKEALTGLVCL
VCFLSATCFTLQSGNYWLEIFDNFAASPNLLMLAFLEVVGVVYVYGMKRFCDDIAWMT
GRRPSPYWRLTWRVVSPLLLTIFVAYIILLFWKPLRYKAWNPKYELFPSRQEKLYPGW
ARAACVLLSLLPVLWVPVAALAQLLTRRRRTWRDRDARPDTDMRPDTDTRPDTDMRPD
TDMR"
BASE COUNT 439 a 661 c 620 g 435 t
ORIGIN
1 cagaggctgg agacggctct ctagtgctgg gtgtggagtg aggcaccacc cttgccctga
61 agcctggggc actcagtcac catggctcat gccccagaac cggacccggc cgcctgcgac
121 ctcggggatg agaggcccaa gtgggacaac aaggcccagt acctcctgag ctgcactggg
181 tttgccgtgg gactggggaa catttggcgg ttcccatacc tgtgccagac ctatggagga
241 ggggccttcc tcatccccta cgtcatcgcg ctggtcttcg aggggatccc cattttccac
301 gtcgagctcg ccatcggcca gcggctgcgg aagggcagcg tcggcgtgtg gacggccatc
361 tccccgtacc tcagtggagt agggctgggc tgtgtcacgc tgtccttcct gatcagcctg
421 tactacaaca ccatcgtggc gtgggtgctg tggtacctcc tcaactcctt ccagcacccg
481 ctgccctgga gctcctgccc accggacctc aacagaacag ggtttgtgga ggagtgccag
541 ggcagcagcg ccgtgagcta cttctggtac cggcagacac tgaacatcac agccgacatc
601 aatgacagtg gctccatcca gtggtggctg ctcatctgct tggcagcctc ctgggcagtc
661 gtgtacatgt gtgtcatcag gggcattgag actacaggga aggtgattta cttcacagct
721 ttgttccctt acctggtcct gaccatcttt ctcatcagag ggctgaccct gccaggggca
781 acaaaaggac tcatctactt gttcactccc aacatgcaca ttctccagaa cccccgggtg
841 tggctggacg cagccaccca gatattcttc tctctgtccc tggccttcgg aggacacatc
901 gcttttgcaa gttacaactc gcccaggaat gactgccaga aggatgcggt ggtcatcgcc
961 ctggtcaaca ggatgacctc cctgtacgcg tccatcgctg tcttctctgt cctggggttc
1021 aaagcaacta atgactacga gcactgcctg gacagaaaca tcctcagcct catcaacgac
1081 tttgacttcc cagagcagag catctccagg gacgactacc cagccgtcct catgcacctg
1141 aacgccacct ggcccaagag ggtggcccag ctccccctga aggcctgcct cctggaagac
1201 tttctggata agagtgcctc gggcccgggc ctggccttcg tcgtcttcac ggagaccgac
1261 ctccacatgc cgggggctcc tgtgtgggcc atgctcttct tcgggatgct gttcaccttg
1321 gggctatcga ccatgttcgg gaccgtggag gcggtcatca cacccctgct ggacgtgggg
1381 gtcctgccta gatgggtccc caaggaggcc ctgactgggc tggtctgcct ggtctgcttc
1441 ctctccgcca cctgcttcac gctgcagtct gggaactact ggctggagat tttcgacaat
1501 tttgccgctt ccccgaacct gctcatgttg gcctttctcg aggttgtggg tgtcgtttat
1561 gtttatggaa tgaaacggtt ctgcgatgac attgcgtgga tgaccgggag gcggcccagc
1621 ccctactggc ggctgacctg gagggtggtc agtcccctgc tgctgaccat ctttgtggct
1681 tacatcatcc tcctgttctg gaagccactg agatacaagg cctggaaccc caaatacgag
1741 ctgttcccct cgcgtcagga gaagctctac ccgggctggg cgcgcgccgc ctgtgtgctg
1801 ctgtccttgc tgcccgtgct gtgggtcccg gtggccgcgc ttgctcagct gctcacccgg
1861 cggaggcgga cgtggaggga cagggacgcg cgcccagaca cggacatgcg cccggacacg
1921 gacacgcgcc cagacacgga catgcgcccg gacacggaca tgcgctgaag ccggccggag
1981 cggggcctgc atgggcgggt ctgtgggggg gcttggcctg atggtgggcg gggccccgcc
2041 cacagggccg accccaatac accagcgact caaccttgaa aaaaaaaaaa aaaaaaaaaa
2101 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//