LOCUS BC056606 3207 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens speedy homolog E3 (Xenopus laevis), mRNA (cDNA clone
MGC:57359 IMAGE:4838469), complete cds.
ACCESSION BC056606
VERSION BC056606.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3207)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3207)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (18-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 106 Row: g Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51972277.
FEATURES Location/Qualifiers
source 1..3207
/db_xref="H-InvDB:HIT000259557"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57359 IMAGE:4838469"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3207
/gene="SPDYE3"
/db_xref="GeneID:441272"
/db_xref="HGNC:HGNC:35462"
CDS 186..1835
/gene="SPDYE3"
/codon_start=1
/product="SPDYE3 protein"
/protein_id="AAH56606.1"
/db_xref="GeneID:441272"
/db_xref="HGNC:HGNC:35462"
/translation="MTSHQPQPQEEQSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPP
RRSLGCKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYE
AFNRLLAPGVDPSPPRRSLGCKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMK
AKRRRVSLVLPEYYEAFNRLLAPGVDPSPPRRSLGCKRKRECLDESDDEPEKELAPEP
EETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLAPGVDPSPPRRSLGCKRKRECL
DESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLAPGVDPS
PPRRSLGCKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEY
YEAFNRLLEDPVIKRFLAWDKGLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALY
LANDMEEDDEAPKQKIFYFLYGKTHSHIPLRPKHWFQLCRPMNPRARKNCSQIALFQK
RRFQFFCSMRCRAWVSPEELEEIQAYDPEHWVWARDRAHLS"
BASE COUNT 809 a 694 c 825 g 879 t
ORIGIN
1 tctctgtcgg cgcctggcag ttcaggtgaa caacagtaac ttctcagagc tgttctccac
61 tcctgacttc tcccagcctc gagaattgat aacacactct tctggatccc agcagtgtcc
121 agaagaagac caaggacaga acagagacta gcttcggtga gattggacag attttgggaa
181 agatcatgac gagccatcaa ccgcagcccc aggaagagca gagcccccag cggagcacct
241 cagggtaccc cctccaggag gtggtggatg atgaagtgtc gggaccatca gcccctgggg
301 tagatcccag ccccccacgt aggtcccttg gctgcaaaag gaagagggag tgtttggatg
361 aatctgatga tgagccagag aaggagctcg cccctgagcc tgaggagacc tgggtggcgg
421 agacgctgtg tggcctcaag atgaaggcga agcgacggcg agtgtcgctc gtgctccctg
481 agtactacga ggccttcaac aggctgcttg cccctggggt agatcccagc cccccacgta
541 ggtcccttgg ctgcaaaagg aagagggagt gtttggatga atctgatgat gagccagaga
601 aggagctcgc ccctgagcct gaggagacct gggtggcgga gacgctgtgt ggcctcaaga
661 tgaaggcgaa gcgacggcga gtgtcgctcg tgctccctga gtactacgag gccttcaaca
721 ggctgcttgc ccctggggta gatcccagcc ccccacgtag gtcccttggc tgcaaaagga
781 agagggagtg tttggatgaa tctgatgatg agccagagaa ggagctcgcc cctgagcctg
841 aggagacctg ggtggcagag acgctgtgtg gcctcaagat gaaggcgaag cgacggcgag
901 tgtcgctcgt gctccctgag tactacgagg ccttcaacag gctgcttgcc cctggggtag
961 atcccagccc cccacgtagg tcccttggct gcaaaaggaa gagggagtgt ttggatgaat
1021 ctgatgatga gccagagaag gagctcgccc ctgagcctga ggagacctgg gtggcggaga
1081 cgctgtgtgg cctcaagatg aaggcgaagc gacggcgagt gtcgctcgtg ctccctgagt
1141 actacgaggc cttcaacagg ctgcttgccc ctggggtaga tcccagcccc ccacgtaggt
1201 cccttggctg caaaaggaag agggagtgtt tggatgaatc tgatgatgag ccagagaagg
1261 agctcgcccc tgagcctgag gagacctggg tggcggagac gctgtgtggc ctcaagatga
1321 aggcgaagcg acggcgagtg tcgctcgtgc tccctgagta ctacgaggcc ttcaacaggc
1381 tgcttgagga tcctgtcatt aaaagattcc tggcctggga caaaggtctg agggtgtcag
1441 acaagtatct cctggctatg gtcatagcgt atttcagccg ggccggcctc ccctcctggc
1501 aataccaacg cattcatttc ttcctggctc tctatctggc caatgacatg gaggaggacg
1561 acgaggcccc caaacaaaag atcttctact tcctgtacgg gaagacccac tctcacatac
1621 ccttgcgccc taagcattgg ttccagttat gccgtcccat gaacccgagg gccaggaaga
1681 actgctctca gatagccttg ttccagaagc gtcggttcca gttcttctgt tccatgcgct
1741 gcagggcttg ggtttccccg gaggagttgg aggagatcca ggcttatgac ccagagcact
1801 gggtgtgggc gcgagatcgc gcccaccttt cctagagctc cagggaccgt ggaggcctga
1861 ggtcatcggc ctgagagaag aacaccggac ccaggggaga tgtggatttt cagcaggaac
1921 tttattccag tgctaatggc agacatcagg aaggaggaga ggagccattt gtgcagatca
1981 tctagaagaa cctggaccat tcttgacaga gctgaataca gtgatcacgt tgtcctccaa
2041 ggagcagggg tggggtgggg tacttctagg agtccttgga gaaaagtaag aaaccaggag
2101 tgtttccagt tccacccttt cctgcggcac cacctccctt tttatattgc tgaatgccaa
2161 cctccctggg gcggaacctg gaggtcctgt ttcttacgga cttggttgcc acagtccagg
2221 agcatttgaa ggcacagtgc aggggctcag attggcacag aattctttgt gaaatatgag
2281 tgccacagac tgtaacagat agcttcatgc acactatgca ttttattggt ttgtttggaa
2341 aatgttggcc attgaatcat taataggttt atttcaaata gtttggaaat tgttgtactt
2401 ttgaaaacat gctgttcctg tagagttttt tgatgagagt tatagttgtt atatatacat
2461 aaagataatt ttcttttcat ttttaagtga gaattctttt tatcctaaat cttttattat
2521 ctttaaattt ttctctgtat tattatatgt gctcctgaag cgagcactct ttttatctat
2581 gatacttcca taataatctc ttctatttat agctattggt agttccccca aattctggtc
2641 atagaaattt ttatttgctg tttaggtttg tgactgaatt gtgagaattc agttgtgatt
2701 tttaacatgt cttagatata tatactaaca tgtctaatat atactatcta ttttattgat
2761 ttatttcgaa aaagatgggc aaagaattat ttaaatatta ttttatttat ttaaatattt
2821 attaaatata tttatttatt taaatattta ttaaatatat ttatttattt aaatgttatt
2881 actttaaata ttattttaaa tattttggaa atactggtat ttttgaatag atgctgtttc
2941 tataaagctg tgtgatgggt attataactg ttatatacac ataaatataa ttttgttttc
3001 ctttttaaga gaggattctt tttatcctaa atcttttacc tttcaatctt tgtatctatt
3061 actacatatg ctgctgaagg gagcagactt tttatctatg atacttagtt aatgtatata
3121 ttacatttat agctatgtgg tagttcccct aaattcttgt aaaaataaat ttttatttga
3181 tatttaaaaa aaaaaaaaaa aaaaaaa
//