LOCUS BC056420 2585 bp mRNA linear HUM 26-JUL-2018
DEFINITION Homo sapiens SRY (sex determining region Y)-box 9, mRNA (cDNA clone
MGC:65106 IMAGE:6200521), complete cds.
ACCESSION BC056420
VERSION BC056420.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2585)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2585)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
REFERENCE 3 (bases 1 to 2585)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-JUL-2018) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK Sequence update by database staff to remove vector contamination
COMMENT On Jul 26, 2018 this sequence version replaced BC056420.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 119 Row: o Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37704387.
FEATURES Location/Qualifiers
source 1..2585
/db_xref="H-InvDB:HIT000054170"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:65106 IMAGE:6200521"
/tissue_type="Peripheral Nervous System, sympathetic
trunk"
/clone_lib="Lupski_sympathetic_trunk"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2585
/gene="SOX9"
/gene_synonym="SRA1"
/db_xref="GeneID:6662"
/db_xref="HGNC:HGNC:11204"
/db_xref="MIM:608160"
CDS 363..1892
/gene="SOX9"
/gene_synonym="SRA1"
/codon_start=1
/product="SRY (sex determining region Y)-box 9"
/protein_id="AAH56420.1"
/db_xref="GeneID:6662"
/db_xref="HGNC:HGNC:11204"
/db_xref="MIM:608160"
/translation="MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTE
NTRPQENTFPKGEPDLKKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNK
PHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAER
LRVQHKKDHPDYKYQPRRRKSVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGM
SEVHSPGEHSGQSQGPPTPPTTPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIG
ELSSDVISNIETFDVNEFDQYLPPNGHPGVPATHGQVTYTGSYGISSTAATPASAGHV
WMSKQQAPPPPPQQPPQAPPAPQAPPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQS
QRTHIKTEQLSPSHYSEQQQHSPQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSS
YYSHAAGQGTGLYSTFTYMNPAQRPMYTPIADTSGVPSIPQTHSPQHWEQPVYTQLTR
P"
BASE COUNT 638 a 857 c 654 g 436 t
ORIGIN
1 aagcggagct cgaaactgac tggaaacttc agtggcgcgg agactcgcca gtttcaaccc
61 cggaaacttt tctttgcagg aggagaagag aaggggtgca agcgccccca cttttgctct
121 ttttcctccc ctcctcctcc tctccaattc gcctcccccc acttggagcg ggcagctgtg
181 aactggccac cccgcgcctt cctaagtgct cgccgcggta gccggccgac gcgccagctt
241 ccccgggagc cgcttgctcc gcatccgggc agccgagggg agaggagccc gcgcctcgag
301 tccccgagcc gccgcggctt ctcgcctttc ccggccacca gccccctgcc ccgggcccgc
361 gtatgaatct cctggacccc ttcatgaaga tgaccgacga gcaggagaag ggcctgtccg
421 gcgcccccag ccccaccatg tccgaggact ccgcgggctc gccctgcccg tcgggctccg
481 gctcggacac cgagaacacg cggccccagg agaacacgtt ccccaagggc gagcccgatc
541 tgaagaagga gagcgaggag gacaagttcc ccgtgtgcat ccgcgaggcg gtcagccagg
601 tgctcaaagg ctacgactgg acgctggtgc ccatgccggt gcgcgtcaac ggctccagca
661 agaacaagcc gcacgtcaag cggcccatga acgccttcat ggtgtgggcg caggcggcgc
721 gcaggaagct cgcggaccag tacccgcact tgcacaacgc cgagctcagc aagacgctgg
781 gcaagctctg gagacttctg aacgagagcg agaagcggcc cttcgtggag gaggcggagc
841 ggctgcgcgt gcagcacaag aaggaccacc cggattacaa gtaccagccg cggcggagga
901 agtcggtgaa gaacgggcag gcggaggcag aggaggccac ggagcagacg cacatctccc
961 ccaacgccat cttcaaggcg ctgcaggccg actcgccaca ctcctcctcc ggcatgagcg
1021 aggtgcactc ccccggcgag cactcggggc aatcccaggg cccaccgacc ccacccacca
1081 cccccaaaac cgacgtgcag ccgggcaagg ctgacctgaa gcgagagggg cgccccttgc
1141 cagagggggg cagacagccc cctatcgact tccgcgacgt ggacatcggc gagctgagca
1201 gcgacgtcat ctccaacatc gagaccttcg atgtcaacga gtttgaccag tacctgccgc
1261 ccaacggcca cccgggggtg ccggccacgc acggccaggt cacctacacg ggcagctacg
1321 gcatcagcag caccgcggcc accccggcga gcgcgggcca cgtgtggatg tccaagcagc
1381 aggcgccgcc gccacccccg cagcagcccc cacaggcccc gccggccccg caggcgcccc
1441 cgcagccgca ggcggcgccc ccacagcagc cggcggcacc cccgcagcag ccacaggcgc
1501 acacgctgac cacgctgagc agcgagccgg gccagtccca gcgaacgcac atcaagacgg
1561 agcagctgag ccccagccac tacagcgagc agcagcagca ctcgccccaa cagatcgcct
1621 acagcccctt caacctccca cactacagcc cctcctaccc gcccatcacc cgctcacagt
1681 acgactacac cgaccaccag aactccagct cctactacag ccacgcggca ggccagggca
1741 ccggcctcta ctccaccttc acctacatga accccgctca gcgccccatg tacaccccca
1801 tcgccgacac ctctggggtc ccttccatcc cgcagaccca cagcccccag cactgggaac
1861 aacccgtcta cacacagctc actcgacctt gaggaggcct cccacgaagg gcgaagatgg
1921 ccgagatgat cctaaaaata accgaagaaa gagaggacca accagaattc cctttggaca
1981 tttgtgtttt tttgtttttt tattttgttt tgttttttct tcttcttctt cttccttaaa
2041 gacatttaag ctaaaggcaa ctcgtaccca aatttccaag acacaaacat gacctatcca
2101 agcgcattac ccacttgtgg ccaatcagtg gccaggccaa ccttggctaa atggagcagc
2161 gaaatcaacg agaaactgga ctttttaaac cctcttcaga gcaagcgtgg aggatgatgg
2221 agaatcgtgt gatcagtgtg ctaaatctct ctgcctgttt ggactttgta attatttttt
2281 tagcagtaat taaagaaaaa agtcctctgt gaggaatatt ctctatttta aatattttta
2341 gtatgtactg tgtatgattc attaccattt tgaggggatt tatacatatt tttagataaa
2401 attaaatgct cttatttttc caacagctaa actactctta gttgaacagt gtgccctagc
2461 ttttcttgca accagagtat ttttgtacag atttgctttc tcttacaaaa aaaaaaaaaa
2521 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2581 aaaaa
//