LOCUS BC056420 2585 bp mRNA linear HUM 26-JUL-2018 DEFINITION Homo sapiens SRY (sex determining region Y)-box 9, mRNA (cDNA clone MGC:65106 IMAGE:6200521), complete cds. ACCESSION BC056420 VERSION BC056420.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2585) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2585) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (14-AUG-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov REFERENCE 3 (bases 1 to 2585) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (26-JUL-2018) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK Sequence update by database staff to remove vector contamination COMMENT On Jul 26, 2018 this sequence version replaced BC056420.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. James R. Lupski cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 119 Row: o Column: 21 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 37704387. FEATURES Location/Qualifiers source 1..2585 /db_xref="H-InvDB:HIT000054170" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:65106 IMAGE:6200521" /tissue_type="Peripheral Nervous System, sympathetic trunk" /clone_lib="Lupski_sympathetic_trunk" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2585 /gene="SOX9" /gene_synonym="SRA1" /db_xref="GeneID:6662" /db_xref="HGNC:HGNC:11204" /db_xref="MIM:608160" CDS 363..1892 /gene="SOX9" /gene_synonym="SRA1" /codon_start=1 /product="SRY (sex determining region Y)-box 9" /protein_id="AAH56420.1" /db_xref="GeneID:6662" /db_xref="HGNC:HGNC:11204" /db_xref="MIM:608160" /translation="MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTE NTRPQENTFPKGEPDLKKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNK PHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAER LRVQHKKDHPDYKYQPRRRKSVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGM SEVHSPGEHSGQSQGPPTPPTTPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIG ELSSDVISNIETFDVNEFDQYLPPNGHPGVPATHGQVTYTGSYGISSTAATPASAGHV WMSKQQAPPPPPQQPPQAPPAPQAPPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQS QRTHIKTEQLSPSHYSEQQQHSPQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSS YYSHAAGQGTGLYSTFTYMNPAQRPMYTPIADTSGVPSIPQTHSPQHWEQPVYTQLTR P" BASE COUNT 638 a 857 c 654 g 436 t ORIGIN 1 aagcggagct cgaaactgac tggaaacttc agtggcgcgg agactcgcca gtttcaaccc 61 cggaaacttt tctttgcagg aggagaagag aaggggtgca agcgccccca cttttgctct 121 ttttcctccc ctcctcctcc tctccaattc gcctcccccc acttggagcg ggcagctgtg 181 aactggccac cccgcgcctt cctaagtgct cgccgcggta gccggccgac gcgccagctt 241 ccccgggagc cgcttgctcc gcatccgggc agccgagggg agaggagccc gcgcctcgag 301 tccccgagcc gccgcggctt ctcgcctttc ccggccacca gccccctgcc ccgggcccgc 361 gtatgaatct cctggacccc ttcatgaaga tgaccgacga gcaggagaag ggcctgtccg 421 gcgcccccag ccccaccatg tccgaggact ccgcgggctc gccctgcccg tcgggctccg 481 gctcggacac cgagaacacg cggccccagg agaacacgtt ccccaagggc gagcccgatc 541 tgaagaagga gagcgaggag gacaagttcc ccgtgtgcat ccgcgaggcg gtcagccagg 601 tgctcaaagg ctacgactgg acgctggtgc ccatgccggt gcgcgtcaac ggctccagca 661 agaacaagcc gcacgtcaag cggcccatga acgccttcat ggtgtgggcg caggcggcgc 721 gcaggaagct cgcggaccag tacccgcact tgcacaacgc cgagctcagc aagacgctgg 781 gcaagctctg gagacttctg aacgagagcg agaagcggcc cttcgtggag gaggcggagc 841 ggctgcgcgt gcagcacaag aaggaccacc cggattacaa gtaccagccg cggcggagga 901 agtcggtgaa gaacgggcag gcggaggcag aggaggccac ggagcagacg cacatctccc 961 ccaacgccat cttcaaggcg ctgcaggccg actcgccaca ctcctcctcc ggcatgagcg 1021 aggtgcactc ccccggcgag cactcggggc aatcccaggg cccaccgacc ccacccacca 1081 cccccaaaac cgacgtgcag ccgggcaagg ctgacctgaa gcgagagggg cgccccttgc 1141 cagagggggg cagacagccc cctatcgact tccgcgacgt ggacatcggc gagctgagca 1201 gcgacgtcat ctccaacatc gagaccttcg atgtcaacga gtttgaccag tacctgccgc 1261 ccaacggcca cccgggggtg ccggccacgc acggccaggt cacctacacg ggcagctacg 1321 gcatcagcag caccgcggcc accccggcga gcgcgggcca cgtgtggatg tccaagcagc 1381 aggcgccgcc gccacccccg cagcagcccc cacaggcccc gccggccccg caggcgcccc 1441 cgcagccgca ggcggcgccc ccacagcagc cggcggcacc cccgcagcag ccacaggcgc 1501 acacgctgac cacgctgagc agcgagccgg gccagtccca gcgaacgcac atcaagacgg 1561 agcagctgag ccccagccac tacagcgagc agcagcagca ctcgccccaa cagatcgcct 1621 acagcccctt caacctccca cactacagcc cctcctaccc gcccatcacc cgctcacagt 1681 acgactacac cgaccaccag aactccagct cctactacag ccacgcggca ggccagggca 1741 ccggcctcta ctccaccttc acctacatga accccgctca gcgccccatg tacaccccca 1801 tcgccgacac ctctggggtc ccttccatcc cgcagaccca cagcccccag cactgggaac 1861 aacccgtcta cacacagctc actcgacctt gaggaggcct cccacgaagg gcgaagatgg 1921 ccgagatgat cctaaaaata accgaagaaa gagaggacca accagaattc cctttggaca 1981 tttgtgtttt tttgtttttt tattttgttt tgttttttct tcttcttctt cttccttaaa 2041 gacatttaag ctaaaggcaa ctcgtaccca aatttccaag acacaaacat gacctatcca 2101 agcgcattac ccacttgtgg ccaatcagtg gccaggccaa ccttggctaa atggagcagc 2161 gaaatcaacg agaaactgga ctttttaaac cctcttcaga gcaagcgtgg aggatgatgg 2221 agaatcgtgt gatcagtgtg ctaaatctct ctgcctgttt ggactttgta attatttttt 2281 tagcagtaat taaagaaaaa agtcctctgt gaggaatatt ctctatttta aatattttta 2341 gtatgtactg tgtatgattc attaccattt tgaggggatt tatacatatt tttagataaa 2401 attaaatgct cttatttttc caacagctaa actactctta gttgaacagt gtgccctagc 2461 ttttcttgca accagagtat ttttgtacag atttgctttc tcttacaaaa aaaaaaaaaa 2521 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2581 aaaaa //