LOCUS BC056418 2706 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens melanoma cell adhesion molecule, mRNA (cDNA clone MGC:65073 IMAGE:6195486), complete cds. ACCESSION BC056418 VERSION BC056418.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2706) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2706) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (14-AUG-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. James R. Lupski cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 119 Row: o Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 5729917. FEATURES Location/Qualifiers source 1..2706 /db_xref="H-InvDB:HIT000054169" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:65073 IMAGE:6195486" /tissue_type="Peripheral Nervous System, sympathetic trunk" /clone_lib="Lupski_sympathetic_trunk" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2706 /gene="MCAM" /gene_synonym="CD146" /gene_synonym="MUC18" /db_xref="GeneID:4162" /db_xref="HGNC:HGNC:6934" /db_xref="MIM:155735" CDS 20..1960 /gene="MCAM" /gene_synonym="CD146" /gene_synonym="MUC18" /codon_start=1 /product="melanoma cell adhesion molecule" /protein_id="AAH56418.1" /db_xref="GeneID:4162" /db_xref="HGNC:HGNC:6934" /db_xref="MIM:155735" /translation="MGLPRLVCAFLLAACCCCPRVAGVPGEAEQPAPELVEVEVGSTA LLKCGLSQSQGNLSHVDWFSVHKEKRTLIFRVRQGQGQSEPGEYEQRLSLQDRGATLA LTQVTPQDERIFLCQGKRPRSQEYRIQLRVYKAPEEPNIQVNPLGIPVNSKEPEEVAT CVGRNGYPIPQVIWYKNGRPLKEEKNRVHIQSSQTVESSGLYTLQSILKAQLVKEDKD AQFYCELNYRLPSGNHMKESREVTVPVFYPTEKVWLEVEPVGMLKEGDRVEIRCLADG NPPPHFSISKQNPSTREAEEETTNDNGVLVLEPARKEHSGRYECQGLDLDTMISLLSE PQELLVNYVSDVRVSPAAPERQEGSSLTLTCEAESSQDLEFQWLREETGQVLERGPVL QLHDLKREAGGGYRCVASVPSIPGLNRTQLVNVAIFGPPWMAFKERKVWVKENMVLNL SCEASGHPRPTISWNVNGTASEQDQDPQRVLSTLNVLVTPELLETGVECTASNDLGKN TSILFLELVNLTTLTPDSNTTTGLSTSTASPHTRANSTSTERKLPEPESRGVVIVAVI VCILVLAVLGAVLYFLYKKGKLPCRRSGKQEITLPPSRKSELVVEVKSDKLPEEMGLL QGSSGDKRAPGDQGEKYIDLRH" BASE COUNT 616 a 801 c 780 g 509 t ORIGIN 1 cgccctccgg ccgggaagca tggggcttcc caggctggtc tgcgccttct tgctcgccgc 61 ctgctgctgc tgtcctcgcg tcgcgggtgt gcccggagag gctgagcagc ctgcgcctga 121 gctggtggag gtggaagtgg gcagcacagc ccttctgaag tgcggcctct cccagtccca 181 aggcaacctc agccatgtcg actggttttc tgtccacaag gagaagcgga cgctcatctt 241 ccgtgtgcgc cagggccagg gccagagcga acctggggag tacgagcagc ggctcagcct 301 ccaggacaga ggggctactc tggccctgac tcaagtcacc ccccaagacg agcgcatctt 361 cttgtgccag ggcaagcgcc ctcggtccca ggagtaccgc atccagctcc gcgtctacaa 421 agctccggag gagccaaaca tccaggtcaa ccccctgggc atccctgtga acagtaagga 481 gcctgaggag gtcgctacct gtgtagggag gaacgggtac cccattcctc aagtcatctg 541 gtacaagaat ggccggcctc tgaaggagga gaagaaccgg gtccacattc agtcgtccca 601 gactgtggag tcgagtggtt tgtacacctt gcagagtatt ctgaaggcac agctggttaa 661 agaagacaaa gatgcccagt tttactgtga gctcaactac cggctgccca gtgggaacca 721 catgaaggag tccagggaag tcaccgtccc tgttttctac ccgacagaaa aagtgtggct 781 ggaagtggag cccgtgggaa tgctgaagga aggggaccgc gtggaaatca ggtgtttggc 841 tgatggcaac cctccaccac acttcagcat cagcaagcag aaccccagca ccagggaggc 901 agaggaagag acaaccaacg acaacggggt cctggtgctg gagcctgccc ggaaggaaca 961 cagtgggcgc tatgaatgtc agggcctgga cttggacacc atgatatcgc tgctgagtga 1021 accacaggaa ctactggtga actatgtgtc tgacgtccga gtgagtcccg cagcccctga 1081 gagacaggaa ggcagcagcc tcaccctgac ctgtgaggca gagagtagcc aggacctcga 1141 gttccagtgg ctgagagaag agacaggcca ggtgctggaa agggggcctg tgcttcagtt 1201 gcatgacctg aaacgggagg caggaggcgg ctatcgctgc gtggcgtctg tgcccagcat 1261 acccggcctg aaccgcacac agctggtcaa cgtggccatt tttggccccc cttggatggc 1321 attcaaggag aggaaggtgt gggtgaaaga gaatatggtg ttgaatctgt cttgtgaagc 1381 gtcagggcac ccccggccca ccatctcctg gaacgtcaac ggcacggcaa gtgaacaaga 1441 ccaagatcca cagcgagtcc tgagcaccct gaatgtcctc gtgaccccgg agctgttgga 1501 gacaggtgtt gaatgcacgg cctccaacga cctgggcaaa aacaccagca tcctcttcct 1561 ggagctggtc aatttaacca ccctcacacc agactccaac acaaccactg gcctcagcac 1621 ttccactgcc agtcctcata ccagagccaa cagcacctcc acagagagaa agctgccgga 1681 gccggagagc cggggcgtgg tcatcgtggc tgtgattgtg tgcatcctgg tcctggcggt 1741 gctgggcgct gtcctctatt tcctctataa gaagggcaag ctgccgtgca ggcgctcagg 1801 gaagcaggag atcacgctgc ccccgtctcg taagagcgaa cttgtagttg aagttaagtc 1861 agataagctc ccagaagaga tgggcctcct gcagggcagc agcggtgaca agagggctcc 1921 gggagaccag ggagagaaat acatcgatct gaggcattag ccccgaatca cttcagctcc 1981 cttccctgcc tggaccattc ccagctccct gctcactctt ctctcagcca aagcctccaa 2041 agggactaga gagaagcctc ctgctcccct cgcctgcaca ccccctttca gagggccact 2101 gggttaggac ctgaggacct cacttggccc tgcaaggccc gcttttcagg gaccagtcca 2161 ccaccatctc ctccacgttg agtgaagctc atcccaagca aggagcccca gtctcccgag 2221 cgggtaggag agtttcttgc agaacgtgtt ttttctttac acacattatg gctgtaaata 2281 cctggctcct gccagcagct gagctgggta gcctctctga gctggtttcc tgccccaaag 2341 gctggcttcc accatccagg tgcaccactg aagtgaggac acaccggagc caggcgcctg 2401 ctcatgttga agtgcgctgt tcacacccgc tccggagagc accccagcag catccagaag 2461 cagctgcagt gttgctgcca ccaccctcct gtctgcctct tcaaagtctc ctgtgacatt 2521 ttttctttgg tcagaagcca ggaactggtg tcattcctta aaagatacgt gccggggcca 2581 ggtgtggtgg ctcacgcctg taatcccagc actttgggag gccgaggcgg gcggatcaca 2641 aagtcaggac gagaccatcc tggctaacac ggtgaaaccc tgtctctact aaaaaaaaaa 2701 aaaaaa //