LOCUS BC056219 4465 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 29, mRNA (cDNA
clone MGC:51309 IMAGE:5315083), complete cds.
ACCESSION BC056219
VERSION BC056219.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4465)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4465)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 91 Row: p Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 67782361.
FEATURES Location/Qualifiers
source 1..4465
/db_xref="H-InvDB:HIT000054140"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:51309 IMAGE:5315083"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4465
/gene="DHX29"
/db_xref="GeneID:54505"
/db_xref="HGNC:HGNC:15815"
CDS 98..4207
/gene="DHX29"
/codon_start=1
/product="DEAH (Asp-Glu-Ala-His) box polypeptide 29"
/protein_id="AAH56219.1"
/db_xref="GeneID:54505"
/db_xref="HGNC:HGNC:15815"
/translation="MGGKNKKHKAPAAAVVRAAVSASRAKSAEAGIAGEAQSKKPVSR
PATAAAAAAGSREPRVKQGPKIYSFNSTNDSSGPANLDKSILKVVINNKLEQRIIGVI
NEHKKQNNDKGMISGRLTAKKLQDLYMALQAFSFKTKDIEDAMTNTLLYGGDLHSALD
WLCLNLSDDALPEGFSQEFEEQQPKSRPKFQSPQIQATISPPLQPKTKTYEEDPKSKP
KKEEKNMEVNMKEWILRYAEQQNEEEKNENSKSLEEEEKFDPNERYLHLAAKLLDAKE
QAATFKLEKNKQGQKEAQEKIRKFQREMETLEDHPVFNPAMKISHQQNERKKPPVATE
GESALNFNLFEKSAAATEEEKDKKKEPHDVRNFDYTARSWTGKSPKQFLIDWVRKNLP
KSPNPSFEKVPVGRYWKCRVRVIKSEDDVLVVCPTILTEDGMQAQHLGATLALYRLVK
GQSVHQLLPPTYRDVWLEWSDAEKKREELNKMETNKPRDLFIAKLLNKLKQQQQQQQQ
HSENKRENSEDPEESWENLVSDEDFSALSLESANVEDLEPVRNLFRKLQSTPKYQKLL
KERQQLPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLNEWEASKCN
IVCTQHRRISAVSLANRVCDELGCENGPGGRNSLCGYQIRMESRACESTRLLYCTTGV
LLRKLQEDGLLSNVSHVIVDEVHERSVQSDFLLIILKEILQKRSDLHLILMSATVDSE
KFSTYFTHCPILRISGRSYPVEVFHLEDIIEETGFVLEKDSEYCQKFLEEEEEVTINV
TSKAGGIKKYQEYIPVQTGAHADLNPFYQKYSSRTQHAILYMNPHKINLDLILELLAY
LDKSPQFRNIEGAVLIFLPGLAHIQQLYDLLSNDRRFYSERYKVIALHSILSTQDQAA
AFTLPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSK
ASALQRQGRAGRVRDGFCFRMYTRERFEGFMDYSVPEILRVPLEELCLHIMKCNLGSP
EDFLSKALDPPQLQVISNAMNLLRKIGACELNEPKLTPLGQHLAALPVNVKIGKMLIF
GAIFGCLDPVATLAAVMTEKSPFTTPIGRKDEADLAKSALAMADSDHLTIYNAYLGWK
KARQEGGYRSEITYCRRNFLNRTSLLTLEDVKQELIKLVKAAGFSSSTTSTSWEGNRA
SQTLSFQEIALLKAVLVAGLYDNVGKIIYTKSVDVTEKLACIVETAQGKAQVHPSSVN
RDLQTHGWLLYQEKIRYARVYLRETTLITPFPVLLFGGDIEVQHRERLLSIDGWIYFQ
APVKIAVIFKQLRVLIDSVLRKKLENPKMSLENDKILQIITELIKTENN"
BASE COUNT 1498 a 829 c 959 g 1179 t
ORIGIN
1 gtggcagccc cggagccggg gaatgtgaag agctctcggc tgtgcagtgg taccgtcggg
61 gcctgggccg cgaaggatct tctgccacag ctgcaacatg ggcggcaaga acaagaaaca
121 caaggctcca gcggccgcgg tggtccgggc cgccgtgtct gcttccagag ccaaatctgc
181 cgaggctgga attgccgggg aggcccaaag caagaagcca gtgtccaggc cggccaccgc
241 tgccgctgcc gctgccggct ccagggagcc ccgtgtcaag caaggtccaa aaatttatag
301 ttttaattct acaaatgatt ctagtggtcc tgcaaatctg gataaatcta ttttgaaagt
361 ggtaattaat aacaaactag agcaaagaat tattggagtg atcaatgagc ataaaaagca
421 aaataatgac aaaggaatga tttctggaag acttactgcc aaaaaattgc aggatttata
481 catggcttta caagcatttt catttaagac aaaggacatt gaagatgcca tgaccaatac
541 actcttatat ggaggtgacc ttcattctgc cttggattgg ctctgtttaa acctttcaga
601 tgatgcactt cctgaaggat tcagtcagga atttgaagag cagcaaccta aaagtaggcc
661 taaatttcag tctcctcaaa tacaagccac tatttcacct ccattgcaac ctaaaacaaa
721 aacatatgaa gaggacccta agagtaagcc aaaaaaggaa gaaaaaaata tggaagtaaa
781 tatgaaagag tggattttac gatatgctga acaacaaaat gaagaagaga agaatgagaa
841 ttctaaaagt ttagaagagg aggaaaaatt tgaccctaat gaaaggtact tacatcttgc
901 agcaaaactg ctggatgcaa aagaacaagc agctaccttt aaactagaaa aaaacaagca
961 aggccaaaaa gaggctcagg aaaaaataag gaaatttcaa agagaaatgg aaactttaga
1021 agaccatcca gtatttaacc cagccatgaa gatttcacat caacaaaatg aaaggaaaaa
1081 gcctcctgta gccacagaag gagaaagtgc attgaatttt aatttatttg aaaaatctgc
1141 agctgctact gaagaagaga aagataaaaa gaaagaacct catgatgtaa gaaattttga
1201 ctatactgct cgaagttgga ctggaaaatc tcccaaacaa tttctgattg attgggtcag
1261 gaagaatctt cccaagagtc caaatccttc ctttgaaaaa gttccagtag gtagatactg
1321 gaaatgtagg gttagggtaa tcaagtctga agatgatgtc ctggtagtat gccctacaat
1381 cttaacagaa gatggcatgc aagctcagca cctgggagct actttagccc tttaccgttt
1441 agttaaaggg cagtcagttc atcagttact tcctcccact taccgagatg tttggctgga
1501 gtggagtgat gcagaaaaga aaagggaaga attaaataaa atggaaacca ataaaccacg
1561 tgatcttttt attgccaaac ttctgaataa actgaaacag cagcaacagc agcaacaaca
1621 gcattctgaa aataagagag aaaactctga agatcccgag gaatcttggg aaaatttagt
1681 ttcggatgag gatttttctg cactgtcctt ggaatcagca aatgtggaag atttggaacc
1741 tgttagaaac ctctttagaa agttgcaaag cacacctaag tatcagaaac ttctaaagga
1801 aagacaacag ctacctgtat ttaaacatcg ggactcaatt gttgaaactc ttaaaaggca
1861 tcgggtagtg gttgtggcag gtgaaacagg gagtggtaaa agtactcagg taccacattt
1921 tctattggaa gatttgcttc taaatgagtg ggaagcaagt aaatgtaaca ttgtctgtac
1981 ccaacaccga agaatctcag cagttagttt agccaacaga gtatgtgatg aattgggctg
2041 tgaaaatgga cctggaggaa ggaattcctt gtgtggatat cagatccgga tggaatctcg
2101 agcttgtgaa tctaccaggt tactctattg tacaacaggg gttttgctaa ggaaacttca
2161 agaagatggt cttctaagta atgtgtctca tgttattgta gatgaggttc atgaaagaag
2221 tgtccagtca gacttcctac taattatctt gaaggaaatt ttacagaaac gttctgatct
2281 acacttgatt ctaatgagtg ccactgtgga cagcgaaaaa ttttctacat atttcacaca
2341 ctgccccatt ctcagaattt caggaaggag ttatcctgtt gaggtttttc atcttgaaga
2401 tataatagaa gaaacaggct ttgtactgga aaaagactca gaatattgtc agaaatttct
2461 ggaagaggaa gaagaagtaa ccattaatgt tacaagcaaa gcagggggaa taaaaaaata
2521 tcaggaatac atcccagttc agactggagc acatgctgat ttaaatccat tttaccaaaa
2581 gtacagcagc cgcactcagc atgctattct atacatgaat cctcataaaa tcaacctgga
2641 tctcattttg gaacttcttg catacttaga taaaagtccc caattcagaa atattgaagg
2701 agcagtattg atctttttac caggacttgc tcatattcag cagttgtatg atcttctatc
2761 aaatgataga agattttatt ctgaacgata taaagtgata gctctgcatt ctattctttc
2821 aacccaagat caagctgcag cattcacact tccccctcca ggagtcagga agattgtttt
2881 agcaaccaat attgcagaga cgggtatcac tattcctgat gttgtatttg taattgatac
2941 tggaagaaca aaagaaaata agtaccatga aagcagtcag atgagttctt tggtggagac
3001 gtttgtcagt aaagccagtg ctttgcagcg ccagggaaga gctgggcggg tcagagatgg
3061 cttctgtttc cgaatgtaca caagagaaag atttgaaggc tttatggatt attctgttcc
3121 tgaaatctta cgtgtacctt tggaggaatt atgccttcat attatgaaat gtaatcttgg
3181 ttctcctgaa gatttcctct ccaaagcctt agatcctcct cagctccaag tgatcagcaa
3241 tgcaatgaat ttgctccgaa aaattggagc ttgtgaatta aatgagccta aactgactcc
3301 gttgggccaa caccttgcag ctttacctgt gaatgtcaag attggcaaga tgcttatttt
3361 tggtgccata tttggctgcc ttgacccagt ggcaacacta gctgcagtta tgacagagaa
3421 gtctcctttt accacaccaa ttggtcgaaa agatgaagca gatcttgcaa aatcagcttt
3481 ggccatggcg gattcagacc acctgacgat ctacaatgca tatctaggat ggaagaaagc
3541 acgacaagaa ggaggttatc gttctgaaat cacatactgc cggaggaact ttcttaatag
3601 aacatcactg ttaaccctag aggatgtaaa gcaggagtta ataaagttgg ttaaggcagc
3661 aggattttca tcttccacaa cttctaccag ctgggaagga aacagagcct cacagaccct
3721 ctcattccaa gaaattgccc ttcttaaagc tgtactggtg gctggactgt atgacaatgt
3781 ggggaagata atctatacaa agtcagtgga tgttacagaa aaattggctt gcattgtgga
3841 gacggcccaa ggcaaagcac aagtacaccc atcctcagta aatcgagatt tgcaaactca
3901 tggatggctc ttataccagg agaagataag gtatgccaga gtgtatttga gagaaactac
3961 cctaataacc ccttttccag ttttactttt tggtggtgat atagaagttc agcaccgaga
4021 acgtcttctt tctattgatg gctggatcta ttttcaggcc cctgtaaaga tagctgtcat
4081 tttcaagcag ctgagagttc tcattgattc agttttaaga aaaaagcttg aaaatccaaa
4141 gatgtccctt gaaaatgaca agattctgca gatcattacg gaattgataa aaacagagaa
4201 taactgaaac tgaaattcat ggtcaactgc tttaaaaatt aagatgaaga tacagtcatg
4261 aaattatctg aaaatgggtc atcacattaa gtatttcatt acttaaaatg ttggtactag
4321 ccattaactt aaaggtggtg ggaaaaaagc acatacttta aacatgtata attttctagg
4381 tcctttttaa tgatgattat tctgaatgta tttgccacta catttacaat aaattctttg
4441 gtattatgca aaaaaaaaaa aaaaa
//