LOCUS BC056155 2411 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens splicing factor 3b, subunit 1, 155kDa, mRNA (cDNA
clone IMAGE:3908845), partial cds.
ACCESSION BC056155
VERSION BC056155.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2411)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2411)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (04-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 119 Row: a Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6912653.
FEATURES Location/Qualifiers
source 1..2411
/db_xref="H-InvDB:HIT000259518"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3908845"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2411
/gene="SF3B1"
/gene_synonym="PRP10"
/gene_synonym="SAP155"
/gene_synonym="SF3b155"
/db_xref="GeneID:23451"
/db_xref="MIM:605590"
CDS 45..>2411
/gene="SF3B1"
/gene_synonym="PRP10"
/gene_synonym="SAP155"
/gene_synonym="SF3b155"
/codon_start=1
/product="SF3B1 protein"
/protein_id="AAH56155.1"
/db_xref="GeneID:23451"
/db_xref="MIM:605590"
/translation="MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIY
GGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYD
PFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQH
LTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSW
DQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGH
ATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKR
KSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREI
DERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTED
RTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGT
PPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDL
VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYV
RNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPH
LRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRG
KGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKKKK"
misc_feature 651..1184
/gene="SF3B1"
/gene_synonym="PRP10"
/gene_synonym="SAP155"
/gene_synonym="SF3b155"
/note="Podocalyxin; Region: Podocalyxin. This family
consists of several eukaryotic podocalyxin proteins.
Podocalyxin is a major membrane protein of the glomerular
epithelium and is thought to be involved in maintenance of
the architecture of the foot processes and filtration
slits characteristic of this unique epithelium by virtue
of its high negative charge. Podocalyxin functions as an
anti-adhesin that maintains an open filtration pathway
between neighbouring foot processes in the glomerular
epithelium by charge repulsion"
/db_xref="CDD:pfam05471"
BASE COUNT 737 a 505 c 573 g 596 t
ORIGIN
1 gttcttggga gcgccagttc cgtctgtgtg ttcgagtgga caaaatggcg aagatcgcca
61 agactcacga agatattgaa gcacagattc gagaaattca aggcaagaag gcagctcttg
121 atgaagctca aggagtgggc ctcgattcta caggttatta tgaccaggaa atttatggtg
181 gaagtgacag cagatttgct ggatacgtga catcaattgc tgcaactgaa cttgaagatg
241 atgacgatga ctattcatca tctacgagtt tgcttggtca gaagaagcca ggatatcatg
301 cccctgtggc attgcttaat gatataccac agtcaacaga acagtatgat ccatttgctg
361 agcacagacc tccaaagatt gcagaccggg aagatgaata caaaaagcat aggcggacca
421 tgataatttc cccagagcgt cttgatcctt ttgcagatgg agggaagacc cctgatccta
481 aaatgaatgc taggacttac atggatgtaa tgcgagaaca acacttgact aaagaagaac
541 gagaaattag gcaacagcta gcagaaaaag ctaaagctgg agaactaaaa gtcgtcaatg
601 gagcagcagc gtcccagcct ccatcaaaac gaaaacggcg ttgggatcaa acagctgatc
661 agactcctgg tgccactccc aaaaaactat caagttggga tcaggcagag acccctgggc
721 atactccttc cttaagatgg gatgagacac caggtcgtgc aaagggaagc gagactcctg
781 gagcaacccc aggctcaaaa atatgggatc ctacacctag ccacacacca gcgggagctg
841 ctactcctgg acgaggtgat acaccaggcc atgcgacacc aggccatgga ggcgcaactt
901 ccagtgctcg taaaaacaga tgggatgaaa cccccaaaac agagagagat actcctgggc
961 atggaagtgg atgggctgag actcctcgaa cagatcgagg tggagattct attggtgaaa
1021 caccgactcc tggagccagt aaaagaaaat cacggtggga tgaaacacca gctagtcaga
1081 tgggtggaag cactccagtt ctgacccctg gaaagacacc aattggcaca ccagccatga
1141 acatggctac ccctactcca ggtcacataa tgagtatgac tcctgaacag cttcaggctt
1201 ggcggtggga aagagaaatt gatgagagaa atcgcccact ttctgatgag gaattagatg
1261 ctatgttccc agaaggatat aaggtacttc ctcctccagc tggttatgtt cctattcgaa
1321 ctccagctcg aaagctgaca gctactccaa cacctttggg tggtatgact ggtttccaca
1381 tgcaaactga agatcgaact atgaaaagtg ttaatgacca gccatctgga aatcttccat
1441 ttttaaaacc tgatgatatt caatactttg ataaactatt ggttgatgtt gatgaatcaa
1501 cacttagtcc agaagagcaa aaagagagaa aaataatgaa gttgctttta aaaattaaga
1561 atggaacacc accaatgaga aaggctgcat tgcgtcagat tactgataaa gctcgtgaat
1621 ttggagctgg tcctttgttt aatcagattc ttcctctgct gatgtctcct acacttgagg
1681 atcaagagcg tcatttactt gtgaaagtta ttgataggat actgtacaaa cttgatgact
1741 tagttcgtcc atatgtgcat aagatcctcg tggtcattga accgctattg attgatgaag
1801 attactatgc tagagtggaa ggccgagaga tcatttctaa tttggcaaag gctgctggtc
1861 tggctactat gatctctacc atgagacctg atatagataa catggatgag tatgtccgta
1921 acacaacagc tagagctttt gctgttgtag cctctgccct gggcattcct tctttattgc
1981 ccttcttaaa agctgtgtgc aaaagcaaga agtcctggca agcgagacac actggtatta
2041 agattgtaca acagatagct attcttatgg gctgtgccat cttgccacat cttagaagtt
2101 tagttgaaat cattgaacat ggtcttgtgg atgagcagca gaaagttcgg accatcagtg
2161 ctttggccat tgctgccttg gctgaagcag caactcctta tggtatcgaa tcttttgatt
2221 ctgtgttaaa gcctttatgg aagggtatcc gccaacacag aggaaagggt ttggctgctt
2281 tcttgaaggc tattgggtat cttattcctc ttatggatgc agaatatgcc aactactata
2341 ctagagaagt gatgttaatc cttattcgag aattccagtc tcctgatgag gaaatgaaaa
2401 aaaaaaaaaa a
//