LOCUS BC055429 4396 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens junctophilin 4, mRNA (cDNA clone MGC:51174
IMAGE:5262644), complete cds.
ACCESSION BC055429
VERSION BC055429.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4396)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4396)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 90 Row: n Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33859758.
FEATURES Location/Qualifiers
source 1..4396
/db_xref="H-InvDB:HIT000054126"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:51174 IMAGE:5262644"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4396
/gene="JPH4"
/gene_synonym="hJP-4"
/gene_synonym="KIAA1831"
/db_xref="GeneID:84502"
/db_xref="HGNC:HGNC:20156"
CDS 904..2790
/gene="JPH4"
/gene_synonym="hJP-4"
/gene_synonym="KIAA1831"
/codon_start=1
/product="junctophilin 4"
/protein_id="AAH55429.1"
/db_xref="GeneID:84502"
/db_xref="HGNC:HGNC:20156"
/translation="MSPGGKFDFDDGGCYVGGWEAGRAHGYGVCTGPGAQGEYSGCWA
HGFESLGVFTGPGGHSYQGHWQQGKREGLGVERKSRWTYRGEWLGGLKGRSGVWESVS
GLRYAGLWKDGFQDGYGTETYSDGGTYQGQWQAGKRHGYGVRQSVPYHQAALLRSPRR
TSLDSGHSDPPTPPPPLPLPGDEGGSPASGSRGGFVLAGPGDADGASSRKRTPAAGGF
FRRSLLLSGLRAGGRRSSLGSKRGSLRSEVSSEVGSTGPPGSEASGPPAAAPPALIEG
SATEVYAGEWRADRRSGFGVSQRSNGLRYEGEWLGNQRHGYGRTTRPDGSREEGKYKR
NRLVHGGRVRSLLPLALRRGKVKEKVDRAVEGARRAVSAARQRQEIAAARAADALLKA
VAASSVAEKAVEAARMAKLIAQDLQPMLEAPGRRPRQDSEGSDTEPLDEDSPGVYENG
LTPSEGSPELPSSPASSRQPWRPPACRSPLPPGGDQGPFSSPKAWPEEWGGAGAQAEE
LAGYEAEDEAGMQGPGPRDGSPLLGGCSDSSGSLREEEGEDEEPLPPLRAPAGTEPEP
IAMLVLRGSSSRGHDAGCLTEELGEPAATERPAQPGAANPLVVGAVALLDLSLAFLFS
QLLT"
BASE COUNT 829 a 1418 c 1262 g 887 t
ORIGIN
1 atctccttct cctctctgcc tgcctcctcc ctcaccgaag ggttagcgga cacccatcct
61 tttctgcttg gggaccccac caccacccgc aacactgccg ctgtctcttc ttcaccgtat
121 ccttctctac ccaccctctt ctctcttctc ttctccctgc ccctttaaat ctgcctggcc
181 cagcctcccc cgtgatgctg ggatggagca aacattgatt tgtgctggga tggaatcgga
241 attttgattt atttttcctc tcccaaccat aagaagaaaa aaataataaa aacaccccct
301 cttgagagcc ccctccccct ttgcatccag ctcccagctc ttcttcccta tctccatcca
361 aggcagattt tttcccctac actattctca tcttccccca cccttgccac tacctcgccc
421 ccccacccag cctgctcctc cagctgggga gagaggggac tctccggact cccccacctt
481 tcctctctgg gttggagcag tctctccgga aggggagggg gcttggcttg tccgggcgag
541 gtgggagtgg aggtatcctg ccatggatgc tgtgccgggg aggcagcctg agccccagcc
601 cacatgagac gccgaagaac cggggcagag gggtcctgac agcagccagg gaaacgggtg
661 ccctacgatt ctgcccagcc ccctctcagg acccccaaac tgccatccac actcgacact
721 tcggggttct agccactcag gatgagggtc cggccctgcc tgccctcgct ggggcccccc
781 cgcccggccc cggtctaact gcccccgccc cgaggcctcg cccggctcca aggcccccag
841 caggctctcc agtcccagga tgcgctgagc cgccgggggg ctgaggccgc gccaactaca
901 tgcatgtccc ccgggggcaa gttcgacttt gacgacgggg gctgctacgt ggggggctgg
961 gaggcggggc gggcacatgg ctacggcgtg tgcacgggcc ccggcgccca gggcgagtac
1021 agcggctgct gggcacacgg cttcgagtca ctgggcgtct tcacggggcc cggcggacac
1081 agctaccagg gccactggca gcagggcaag cgcgaagggc tgggcgtgga gcgcaagagc
1141 cgctggacgt accgcggcga gtggctgggc gggctgaagg ggcgcagcgg cgtgtgggaa
1201 agcgtgtccg gcctgcgcta cgccgggctc tggaaggacg gtttccagga cggctacggc
1261 actgagacct actccgacgg aggcacctac cagggccagt ggcaggccgg gaagcgccac
1321 ggctacgggg tacgccagag tgtgccctac catcaggcgg cgctgctgcg ctcgccccgc
1381 cgcacctccc tggattccgg ccacagcgac cccccgacgc cacccccgcc cctgcccttg
1441 ccgggcgacg agggaggcag ccccgcctcg ggctcccggg gcggcttcgt gctggccggg
1501 cccggggacg ccgacggcgc gtcgtcccga aagcgcactc cagcggccgg cggattcttt
1561 cgccgttcgc tgctgctcag cgggctccga gcgggcggac gtcgcagctc cctgggcagc
1621 aagcgaggct ccctgcgcag cgaggtgagc agcgaggtgg gcagcaccgg accgcccggc
1681 tcggaggcca gcgggccccc ggccgcagcg ccgcccgccc tcatcgaggg ctcggccaca
1741 gaggtgtacg cgggcgagtg gcgcgcagat cggcgcagcg gcttcggcgt cagccagcgc
1801 tccaacgggc tgcgctacga gggcgagtgg ctgggcaacc agcggcacgg ctacgggcgc
1861 accacccgcc ccgacggctc ccgcgaggag ggcaagtaca agcgcaaccg gctggtgcac
1921 ggcgggcgcg tccgcagtct cctgcctctg gcccttcggc ggggcaaggt taaggagaag
1981 gtggacaggg ctgtcgaggg cgcccgtcga gccgtgagtg ctgcccgtca gcgccaggag
2041 atcgccgctg ccagggcagc agacgccctc ctaaaggcag tggcagccag cagtgtcgct
2101 gagaaggccg tggaggcagc tcgaatggcc aaactgatag cccaggacct gcagcccatg
2161 ctagaggccc caggccgcag acccaggcag gactcagaag gttccgacac ggagcccctg
2221 gatgaggaca gccctggggt atatgagaac ggactgaccc cctcagaggg atcccctgaa
2281 ctgcccagca gtcctgcctc ctcccgccaa ccctggcgac cccctgcctg ccggagccca
2341 ctgcctcctg gaggggacca gggtcccttc tccagcccca aagcttggcc tgaggagtgg
2401 gggggggcag gcgcacaggc agaggaacta gctggctatg aggctgagga tgaggctggg
2461 atgcaagggc cagggcccag agacggttcc ccactcctcg gaggctgcag cgacagttca
2521 ggaagtcttc gagaggagga gggggaggat gaagagcccc tgcccccgct gagggcccca
2581 gcaggcacgg agcctgagcc catcgccatg ctggtcctga ggggctcgtc ctcgaggggt
2641 catgatgctg ggtgcctgac agaagagctc ggggagcccg ctgcaaccga gaggcctgcc
2701 cagccgggag ctgccaaccc cctggtggtg ggagccgtgg ccctcctgga cctcagcctg
2761 gcattcctgt tctcccagct cctcacctga ggctacttcc tggcctggtt ctggctttgg
2821 ttgcgtgcct cttcacccct ttgacctgcc ttttttctct tctcctcttc ctggctgtgt
2881 tttctcctat ctttctttct cttcttcctt tcttttctgt gctcctttgt ttttttctct
2941 cgctttttct ttccctgtct tctttcagat tatctcattt cttctggatc tgtctctgta
3001 ttcctcactc ccttccccat cccaacccct tctttctcta gattgtttac atatgaaggg
3061 cttttctctc tcagagttgc tgtcttctct gagacacaca aatctaagtc agaccattgc
3121 tccacgccct cccacctttt ctttagacct caacttcgct gcgggtgggg gtttggtgtc
3181 ctaaggagac tcctggaagc tgaatggaga ggaggaagaa aatgaagaag gagtgattga
3241 atgtcgggca aggcactggc tgagctgctg tggctcccta gcctaagggg cctgctgtcc
3301 ctctgaggcc tagtgaaaaa gctgcaggag gtgcatcctc cacctctaat cttggaggct
3361 attatcttac ctccaagcac tgagctgggt tactgcccaa ttccatcctt ccctgaagga
3421 gagaagggaa gtgaaaagta gagtaactcc ccagcatttc cctctttttc tcctcatcgg
3481 ccagcccctc ctccagcccc ctctggtggc atgccatgcc aagagcaacg tgtaaaggaa
3541 cagagaatat ccaatgcagt caagtccacc ctgcccagac tttgccactg acttctccca
3601 cccttctgtc tcccccataa tagtttattt ggttggtctg gactcacttg tggcctttga
3661 ttaaattcct aaggggcctg aagaagacat ttctactgca gagggttaga ggcacttgag
3721 caaggccccc acatcccaac tctgggagtt gtggtgggag gaggcacttc tgggggatag
3781 gaccagacaa gataacagga gctcacatgg aagcagaagc tgtgacaagt ttagtagtcc
3841 caaaatgggt tatatccctt ccccctttac atcagaatct tgtgaaatgg gaaaacaaca
3901 gaaggagggg atcaaagata gctgatctca catgcttccc aggcagggca gaggtgggag
3961 tcaaacccgg gtgacaggtg ggtggagagc actgtttgag gttgtggctg atccctctct
4021 ggtattagtt tttcccctgg gagcaggaag ccctaggaag aggggactgc agggtcccca
4081 ggggatcttt cctccctccc ctgcatgagg cagaggcaag ctgcctgcca accccctccc
4141 tcaaggaatg gccttgccca ggaatgccca ccacacatac cctcttcttt ttttctagtc
4201 aaactcttgt ttattccttg gcttgcctcc ctccttcctc ccctctcaac ctttacttct
4261 gatttctatt tcatggaatt tgggattgaa gttaaactac aacagtgcca ccaacaccaa
4321 gtcttgcagg aaaaaaatac aaagaaattt aacaaaaaaa atatattaat aaaaaagttc
4381 aaaaaaaaaa aaaaaa
//