LOCUS BC055426 3317 bp mRNA linear HUM 11-APR-2007
DEFINITION Homo sapiens Bardet-Biedl syndrome 12, mRNA (cDNA clone MGC:48618
IMAGE:5262398), complete cds.
ACCESSION BC055426
VERSION BC055426.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3317)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3317)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 90 Row: n Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40217787.
FEATURES Location/Qualifiers
source 1..3317
/db_xref="H-InvDB:HIT000054123"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:48618 IMAGE:5262398"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3317
/gene="BBS12"
/db_xref="GeneID:166379"
/db_xref="HGNC:HGNC:26648"
/db_xref="MIM:610683"
CDS 192..2324
/gene="BBS12"
/codon_start=1
/product="Bardet-Biedl syndrome 12"
/protein_id="AAH55426.1"
/db_xref="GeneID:166379"
/db_xref="HGNC:HGNC:26648"
/db_xref="MIM:610683"
/translation="MVMACRVVNKRRHMGLQQLSSFAETGRTFLGPLKSSKFIIDEEC
HESVLISSTVRLLESLDLTSAVGQLLNEAVQAQNNTYRTGISTLLFLVGAWSSAVEEC
LHLGVPISIIVSVMSEGLNFCSEEVVSLHVPVHNIFDCMDSTKTFSQLETFSVSLCPF
LQVPSDTDLIEELHGLKDVASQTLTISNLSGRPLRSYELFKPQTKVEADNNTSRTLKN
SLLADTCCRQSILIHSRHFNRTDNTEGVSKPDGFQEHVTATHKTYRCNDLVELAVGLS
HGDHSSMKLVEEAVQLQYQNACVQQGNCTKPFMFDISRIFTCCLPGLPETSSCVCPGY
ITVVSVSNNPVIKELQNQPVRIVLIEGDLTENYRHLGFNKSANIKTVLDSMQLQEDSS
EELWANHVLQVLIQFKVNLVLVQGNVSERLIEKCINSKRLVIGSVNGSVMQAFAEAAG
AVQVAYITQVNEDCVGNGVCVTFWRSSPLDVVDRNNRIAILLKTEGINLVTAVLTNPV
TAQMQIKEDRFWTCAYRLYYALKEEKVFLGGGAVEFLCLSCLHILAEQSLKKENHACS
GWLHNTSSWLASSLAIYRPTVLKFLANGWQKYLSTLLYNTANYSSEFEVSTYIQHHLQ
NATDSGSPSSYILNEYSKLNSRIFNSDISNKLEQIPRVYDVVTPKIEAWRRALDLVLL
VLQTDSEIITGHGHTQINSQELTGFLFL"
BASE COUNT 1063 a 650 c 693 g 911 t
ORIGIN
1 ctcttagcaa ctaagccccc ggctcctcca gaagcccctc ttcgcacatg cgcaaactgc
61 ggacgggaaa ctgggctccc tagccctggc gtttttggtg ttgctgtccc agccagaatc
121 gcgtctggcc ggtgggaagc cgggaactcc agccccctgt aggagaggag aaaggagcga
181 gatcatgata catggtgatg gcttgcagag tcgtaaacaa aagaagacac atgggacttc
241 aacaactttc atcattcgcg gaaacaggaa gaactttcct aggcccacta aaatcatcca
301 aatttattat agatgaagaa tgtcatgaaa gtgtattaat cagttcaaca gtaaggcttc
361 ttgaaagttt ggatttaacc agtgcagtgg gacaacttct caatgaagca gttcaagcac
421 aaaacaacac atatagaact ggaatcagta ctcttttgtt tcttgttggt gcttggagca
481 gtgcagttga agaatgtctt catcttggtg tccccatttc cataatagta tcagtaatgt
541 cagaaggctt aaacttttgt agtgaagagg tagtttctct tcatgtacct gttcacaata
601 tatttgactg tatggacagc acaaaaacat tttctcaact tgaaacattt agtgtaagtt
661 tgtgtccttt tctacaggtc ccttcagata ctgatttgat agaggaattg catggtctca
721 aagatgttgc ctctcaaaca ctgaccattt ccaacctttc tgggagacct cttagatcat
781 atgaattatt taaacctcag acaaaggttg aagcagataa caacacatca cgaactctga
841 aaaacagcct gcttgcagat acctgctgca gacagtcaat actaatccac agtaggcatt
901 ttaataggac agataatact gaaggggtaa gcaaaccaga tggatttcaa gaacatgtta
961 cagctactca caaaacttac agatgtaatg atttggtaga gttggcagta ggcttgagtc
1021 atggagatca cagcagcatg aagttagtag aagaagcagt acagctgcaa tatcagaatg
1081 cttgtgtgca acaaggcaac tgtacaaaac catttatgtt tgacatttca agaattttca
1141 cttgctgtct accaggctta cctgaaactt cttcttgtgt ttgtccagga tatatcactg
1201 ttgtgtcagt atctaataat cctgtgatca aggaattgca gaatcagcct gtgcgaatag
1261 ttctcattga gggtgacctc acagagaatt accgccacct gggatttaat aagtctgcaa
1321 atattaaaac agtattagat agcatgcagc ttcaagaaga cagctcagaa gaactgtggg
1381 caaatcacgt gttacaggtg ttaatccagt tcaaggtgaa ccttgtcctg gtacaaggaa
1441 atgtgtccga acgcttaatt gaaaaatgta taaacagtaa gcggttggta atcggctcag
1501 tgaatggcag tgtgatgcag gcttttgcag aggctgcagg agcagtacag gtggcctaca
1561 ttacacaagt caatgaagat tgtgtgggca acggggtctg tgtgaccttc tggagaagca
1621 gccctttgga tgttgtagat aggaacaaca gaatcgcaat cttattaaaa acagaaggaa
1681 ttaatttggt tacggccgtg ctcactaacc cagttactgc acagatgcaa atcaaagaag
1741 ataggttctg gacatgtgcc tatcgtttgt attatgctct aaaagaggaa aaggtcttcc
1801 ttggaggtgg tgcagttgaa tttttgtgtc ttagctgtct tcatattctt gcagagcaat
1861 ctctgaaaaa agaaaaccat gcctgctcag ggtggctgca taatacttcc tcttggctgg
1921 cttcatctct ggcaatatac agaccaactg tgcttaaatt cctggcaaat ggatggcaga
1981 aatacctttc aactctccta tataacactg ccaattactc atcagaattt gaagtcagca
2041 catacattca acatcatctg cagaatgcca cagactctgg ctctccttca tcttacatct
2101 tgaatgaata tagtaaacta aatagtagaa tttttaattc agacatttca aataaactgg
2161 agcagattcc gagagtttat gacgttgtta caccaaagat tgaggcgtgg cgccgagcat
2221 tggatttagt attgttagta cttcagacag acagtgaaat aattactgga catggacaca
2281 cacagataaa ttcacaggaa ttaacgggct ttctattttt gtagtgttac tggctaagtc
2341 tttggaaaat aatttttcat aatatgtcat gctaataata aatatattga tagccaagtc
2401 atggtgccta aaatgccagc tattgccaag aagaaaatag ttgatgtcta tcaataactg
2461 tgcatggtct gagattttac cctacttata agctaacaag ttagcctgtt aactgtttcg
2521 tgggatgcta cagaatgcat aagacacctg ggtcagaaac aaaggactta tcgctcacag
2581 caaaagctgt agccagagct tcatgttggt tttattcagt tcctcatttt tctagttccc
2641 acaggaggaa cacaaagggc ccatgatgaa agcctgcaca cagtgggtta tgttgtaagc
2701 ttgggttatt aactgctttt atagtaagca aaaaaatcct ggtctttgtc caaagggagt
2761 tattacccca tacttgaaga tagcttagtg taaacacaag cctaggacat ggactaggta
2821 aagacaaagt ccttgcattc ttgacatacc cagtaagtat gcagggacac tcagagccca
2881 tagtggatag tctcttccaa cagtctgctc ctcagcctga gatgttcttg gccaaacttg
2941 aattttcaca tgagtatgcc actctatcag ctactctgat taacctgaca gtcgggttgt
3001 ttagtcagta ccaaatttgt tcatttggtc tcatatagca attaatgcag gctattatca
3061 gacacagcag caggatgaag ccaacctgca gtattaacct cagtcctgtc ccccaaggtc
3121 ttgactcaat caactgtaag ttccaaggga ggaccaatag gtctttttat taggcagcca
3181 ggatgtagtg aaggacaatt tattatactt tatgacccaa taaagggagc tttgactgaa
3241 aaaaaaagaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3301 acaaaaaaaa aaaaaaa
//