LOCUS BC055288 3209 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens phosphofurin acidic cluster sorting protein 1, mRNA
(cDNA clone IMAGE:6501760), partial cds.
ACCESSION BC055288
VERSION BC055288.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3209)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3209)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (21-JUL-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: p Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922284.
FEATURES Location/Qualifiers
source 1..3209
/db_xref="H-InvDB:HIT000259498"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6501760"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3209
/gene="PACS1"
/gene_synonym="FLJ10209"
/gene_synonym="KIAA1175"
/db_xref="GeneID:55690"
/db_xref="MIM:607492"
CDS <1..1730
/gene="PACS1"
/gene_synonym="FLJ10209"
/gene_synonym="KIAA1175"
/codon_start=3
/product="PACS1 protein"
/protein_id="AAH55288.1"
/db_xref="GeneID:55690"
/db_xref="MIM:607492"
/translation="ESILSTPKPKLKPFFEGMSQSSSQTEIGSLNSKGSLGKDTTSPM
ELAALEKIKSTWIKNQDDSLTETDTLEITDQDMFGDASTSLVVPEKVKTPMKSSKTDL
QGSASPSKVEGVHTPRQKRSTPLKERQLSKPLSERTNSSDSERSPDLGHSTQIPRKVV
YDQLNQILVSDAALPENVILVNTTDWQGQYVAELLQDQRKPVVCTCSTVEVQAVLSAL
LTRIQRYCNCNSSMPRPVKVAAVGGQSYLSSILRFFVKSLANKTSDWLGYMRFLIIPL
GSHPVAKYLGSVDSKYSSSFLDSGWRDLFSRSEPPVSEQLDVAGRVMQYVNGAATTHQ
LPVAEAMLTCRHKFPDEDSYQKFIPFIGVVKVGLVEDSPSTAGDGDDSPVVSLTVPST
SPPSSSGLSRDATATPPSSPSMSSALAIVGSPNSPYGDVIGLQVDYWLGHPGERRREG
DKRDASSKNTLKSVFRSVQVSRLPHSGEAQLSGTMAMTVVTKEKNKKVPTIFLSKKPR
EKEVDSKSQVIEGISRLICSAKQQQTMLRVSIDGVEWSDIKFFQLAAQWPTHVKHFPV
GLFSGSKAT"
BASE COUNT 650 a 1084 c 797 g 678 t
ORIGIN
1 cagaaagcat cctcagcacg ccaaagccca agctcaagcc tttctttgag gggatgtcgc
61 agtccagctc ccagacggag attggcagcc tcaacagcaa aggcagcctc ggaaaagaca
121 ccaccagccc tatggaattg gctgctctag aaaaaattaa atctacttgg attaaaaacc
181 aagatgacag cttgactgaa acagacactc tggaaatcac tgaccaggac atgtttggag
241 atgccagcac gagtctggtt gtgccggaga aagtcaaaac tcccatgaag tccagtaaaa
301 cggatctcca gggctctgcc tcccccagca aagtggaggg ggtgcacaca ccccggcaga
361 agaggagcac gcccctgaag gagcggcagc tctccaagcc cctaagtgag aggaccaaca
421 gttccgacag cgagcgctcc ccagatctgg gccacagcac gcagattcca agaaaggtgg
481 tgtatgacca gctcaatcag atcctggtgt cagatgcagc cctcccagaa aatgtcattc
541 tggtgaacac cactgactgg cagggccagt atgtggctga gctgctccag gaccagcgga
601 agcctgtggt gtgcacctgc tccaccgtgg aggtccaggc cgtgctgtcc gccctgctca
661 cccggatcca gcgctactgc aactgcaact cttccatgcc gaggccagtg aaggtggctg
721 ctgtgggagg ccagagctac ctgagctcca tcctcaggtt ctttgtcaag tccctggcca
781 acaagacctc cgactggctt ggctacatgc gcttcctcat catccccctc ggttctcacc
841 ctgtggccaa atacttgggg tcagtcgaca gtaaatacag tagttccttc ctggattctg
901 gttggagaga tctgttcagt cgctcggagc caccagtgtc agagcaactg gacgtggcag
961 ggcgggtgat gcagtacgtc aacggggcag ccacgacaca ccagcttccc gtggccgaag
1021 ccatgctgac ttgccggcat aagttccctg atgaagactc ctatcagaag tttattccct
1081 tcattggcgt ggtgaaggtg ggtctggttg aagactctcc ctccacagca ggcgatgggg
1141 acgattctcc tgtggtcagc cttactgtgc cctccacatc accaccctcc agctcgggcc
1201 tgagccgaga cgccacggcc acccctccct cctccccatc tatgagcagc gccctggcca
1261 tcgtggggag ccctaatagc ccatatgggg acgtgattgg cctccaggtg gactactggc
1321 tgggccaccc cggggagcgg aggagggaag gcgacaagag ggacgccagc tcgaagaaca
1381 ccctcaagag tgtcttccgc tcagtgcagg tgtcccgcct gccccatagt ggggaggccc
1441 agctttctgg caccatggcc atgactgtgg tcaccaaaga aaagaacaag aaagttccca
1501 ccatcttcct gagcaagaaa ccccgagaaa aggaggtgga ttctaagagc caggtcattg
1561 aaggcatcag ccgcctcatc tgctcagcca agcagcagca gactatgctg agagtgtcca
1621 tcgatggggt cgagtggagt gacatcaagt tcttccagct ggcagcccag tggcccaccc
1681 atgtcaagca ctttccagtg ggactcttca gtggcagcaa ggccacctga ggccctgtct
1741 cccagccact ttccctcctg gcactgccac cagcctcacc gcctgcgggc agggggaggc
1801 cagcaggccc gggcccagca ccccttccct ggcaccaggg tctgcctctc actcgcccag
1861 gtcccgaagg acactgccac agggacgcct tccctcccct cccctccagc ccacccctgc
1921 acagcccctc ctccttcccg cttttcccct tctccctcct gctccaggcc caaggcgtgt
1981 tggttttgcc ttctggtgcc catagtcccc tggactgagt cccccaggcc ttccttcacc
2041 cgacttccaa actcttcctt gtggtatcag tttccttctt ggaaatgaga aagctggaat
2101 cctggtcccc agcaggagag cctagtcctc ccccagcccc tccagccacc agggtgtcct
2161 ctaggatgca gctgccagat ccactcactc tgctgcctcc agcaggaccc aaggccactt
2221 tcaactctta tggggttctc cacctgcccc agagcttccc aagggagggt aagggggcac
2281 cctgagccca caggacccct acttcacagc tcacaggggc aggaggcagc tcccctgcct
2341 ccaggaccct gttgctatgg tgacacagcg tttctaggac agaggggcct cccagtctcc
2401 ccccaccacc cgtgcacgac ttcctcacca cccccaggtt ccctgcagat gtcgtgtgtg
2461 tcctgagtgt ttctttggtt ctttgcacgc caagtctctt ggttgtacca tgtgacacac
2521 cctgtgcact ggtcgctgtc ttcgtggctt ccacccttgt taatgatgct cctgcctctg
2581 cctcccagcc cctcacccag cacagctctg cctggacttg gagagatggg aggcagaccc
2641 ccaccaccat acatgctgtc tgtggcccct cagacattct gtttcatctc ccattcatct
2701 ccctcctccc accgtgtcag tttttctgcc tttccctgct ctgttcttcc ccctccttag
2761 gccccagcct gggcccagac ccatcctccc agccaggttt ccctccagca ggctccttcc
2821 ctccctgtca cctccctctc accaacccgg ggtctgagcc cctcattcct gaccgtccgt
2881 gttctcagga gtggttgagg acacagggcc ccagcccagc cctctgcacc ccccagcccg
2941 gccatctgcg ccccacagcc cctttggagc ttttctcttg tcctctcact ccttcccaga
3001 agtttttgca cagaacttca ttttgaaagt gtttttctca ttctctatac ctcccccaag
3061 ctctcctcca gcccttccca gggctcagcc ctgctgtcct gagcgtctcc tgggccagag
3121 agaggagatg ggggtgggag ggactgagtt gatgttgggt ttttcattca ataaattggt
3181 gatttcttac cgacaaaaaa aaaaaaaaa
//