LOCUS BC054516 2437 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein, mRNA (cDNA clone MGC:60268
IMAGE:5172946), complete cds.
ACCESSION BC054516
VERSION BC054516.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2437)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2437)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: b Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56118220.
FEATURES Location/Qualifiers
source 1..2437
/db_xref="H-InvDB:HIT000054086"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:60268 IMAGE:5172946"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2437
/gene="APBB1IP"
/gene_synonym="INAG1"
/gene_synonym="PREL1"
/gene_synonym="RARP1"
/gene_synonym="RIAM"
/db_xref="GeneID:54518"
/db_xref="HGNC:HGNC:17379"
/db_xref="MIM:609036"
CDS 100..2100
/gene="APBB1IP"
/gene_synonym="INAG1"
/gene_synonym="PREL1"
/gene_synonym="RARP1"
/gene_synonym="RIAM"
/codon_start=1
/product="amyloid beta (A4) precursor protein-binding,
family B, member 1 interacting protein"
/protein_id="AAH54516.1"
/db_xref="GeneID:54518"
/db_xref="HGNC:HGNC:17379"
/db_xref="MIM:609036"
/translation="MGESSEDIDQMFSTLLGEMDLLTQSLGVDTLPPPDPNPPRAEFN
YSVGFKDLNESLNALEDQDLDALMADLVADISEAEQRTIQAQKESLQNQHHSASLQAS
IFSGAASLGYGTNVAATGISQYEDDLPPPPADPVLDLPLPPPPPEPLSQEEEEAQAKA
DKIKLALEKLKEAKVKKLVVKVHMNDNSTKSLMVDERQLARDVLDNLFEKTHCDCNVD
WCLYEIYPELQIERFFEDHENVVEVLSDWTRDTENKILFLEKEEKYAVFKNPQNFYLD
NRGKKESKETNEKMNAKNKESLLEESFCGTSIIVPELEGALYLKEDGKKSWKRRYFLL
RASGIYYVPKGKTKTSRDLACFIQFENVNIYYGTQHKMKYKAPTDYCFVLKHPQIQKE
SQYIKYLCCDDTRTLNQWVMGIRIAKYGKTLYDNYQRAVAKAGLASRWTNLGTVNAAA
PAQPSTGPKTGTTQPNGQIPQATHSVSAVLQEAQRHAETSKDKKPALGNHHDPAVPRA
PHAPKSSLPPPPPVRRSSDTSGSPATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDP
ELPPPPPDFMEPPPDFVPPPPPSYAGIAGSELPPPPPPPPAPAPAPVPDSARPPPAVA
KRPPVPPKRQENPGHPGGAGGGEQDFMSDLMKALQKKRGNVS"
BASE COUNT 680 a 660 c 588 g 509 t
ORIGIN
1 acctggagcc cgggtgcggc agtctgcacc gcgcgtcgct ttcccggccg gagtctcgcc
61 gccttcccgc gccccgcagc gccccgcaga gcagtcgaga tgggtgagtc aagtgaagac
121 atagaccaaa tgttcagcac tttgctggga gagatggatc ttctgactca gagtttagga
181 gttgacactc tccctcctcc tgaccctaat ccacccagag ctgaatttaa ctacagtgtg
241 gggtttaaag atttaaatga gtccttaaat gcactggaag accaagattt agatgctctc
301 atggcagatc tggtagcaga cataagtgag gctgagcaga ggacaatcca ggcacagaaa
361 gagtccttgc agaatcaaca tcattcagca tctctacaag catcaatttt cagtggtgca
421 gcctctcttg gttatggaac aaatgttgct gccactggta tcagccaata tgaggatgac
481 ttaccacctc caccagccga tcctgtgtta gaccttccac tgccaccacc acctcctgaa
541 cctctctctc aggaagagga agaagcccaa gccaaggctg ataaaattaa gctggcgctg
601 gaaaaactga aggaggccaa ggttaagaag ctcgtcgtca aggtgcacat gaatgataac
661 agcacaaagt cactgatggt ggatgagcgg cagctggccc gagatgttct ggacaacctt
721 ttcgagaaaa ctcattgtga ctgcaatgta gactggtgtc tttatgaaat ctacccggaa
781 ctacaaattg agaggttttt tgaagaccat gaaaatgttg ttgaagtctt atcagactgg
841 acaagagaca cagaaaataa aatactattt ttggagaaag aggagaaata tgctgtattt
901 aaaaaccccc agaatttcta cttggataac agaggaaaaa aagaaagcaa ggaaactaat
961 gagaaaatga atgctaagaa caaggaatcc ttacttgagg aaagtttctg tggaacatct
1021 atcattgtac cagaactgga aggagctctt tatttgaaag aagatggaaa gaaatcctgg
1081 aaaaggcgct attttctttt acgggcttct ggaatttatt atgtacccaa aggaaagact
1141 aagacatctc gagatctggc gtgttttata cagtttgaaa atgtcaacat ttactatggg
1201 actcagcata aaatgaaata taaagcgccc actgactatt gctttgtttt aaagcacccc
1261 caaattcaga aggagtccca gtatatcaag tatctctgct gtgatgacac aagaaccctt
1321 aaccagtggg tcatgggaat acggatagcc aagtatggga agactctcta tgataactac
1381 cagcgggctg tggcaaaggc tggacttgcc tctcggtgga caaacttggg gacagtcaat
1441 gcagctgcac cagctcagcc atctacagga cctaaaacag gcaccaccca gcccaatgga
1501 cagattcccc aggctacaca ttctgtcagt gctgttctcc aagaggccca gagacatgct
1561 gaaacatcga aggataagaa gccagccctc gggaaccacc acgacccggc agtgccccgg
1621 gccccgcacg cccccaagtc cagcctgccc ccgccccctc cggtgcggag gtcctccgac
1681 accagcggca gtcccgccac gcccctcaag gccaagggca caggcggcgg gggcttgccc
1741 gccccacccg acgacttcct gccgccgccg ccaccgccgc cgcccctcga tgaccctgag
1801 ctcccgccgc cgcccccgga cttcatggag ccgcccccag acttcgtgcc cccgcccccg
1861 ccgtcgtacg cagggatcgc gggctcagag ctgcccccgc cgccgccgcc gccgcccgcg
1921 cccgcgcccg cccccgtccc cgactccgcc aggccgcccc ccgcggtggc caagaggcct
1981 cctgtgcccc ccaagaggca agagaaccca gggcaccccg gcggagcagg aggcggggag
2041 caagatttca tgtcagacct catgaaagct ttgcaaaaga agagaggcaa cgtgtcctag
2101 ggacgggcat gatgagtgtt ccagagggag aagcatcgct gaccccgagc gcaggttttg
2161 ctagcagatt gccctgacat cttgttcatt tcagataaaa tgtgatggga aacttctcac
2221 tgatgtgctc aagtacaggc ataaccatta acccagtaga gttcagaata tctgcccaaa
2281 tgtacatatc gttcccatgt attttaacct aaatggaatg tatcttccct tccaagctgc
2341 ctaaagcgct gttttaggtt catttatttt attatgttca gaagcatcaa ataaaagtta
2401 aacgtttttc cggaaaaaaa aaaaaaaaaa aaaaaaa
//