LOCUS BC054506 1254 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens C1q and tumor necrosis factor related protein 2, mRNA
(cDNA clone IMAGE:5179095), partial cds.
ACCESSION BC054506
VERSION BC054506.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1254)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1254)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUL-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 110 Row: b Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147510.
FEATURES Location/Qualifiers
source 1..1254
/db_xref="H-InvDB:HIT000054079"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5179095"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1254
/gene="C1QTNF2"
/gene_synonym="CTRP2"
/gene_synonym="zacrp2"
/db_xref="GeneID:114898"
/db_xref="HGNC:HGNC:14325"
CDS <1..971
/gene="C1QTNF2"
/gene_synonym="CTRP2"
/gene_synonym="zacrp2"
/codon_start=3
/product="C1QTNF2 protein"
/protein_id="AAH54506.2"
/db_xref="GeneID:114898"
/db_xref="HGNC:HGNC:14325"
/translation="TLCPAAAAEESRDAEPRRELLCSGRPWTWRAAARVTTMIPWVLL
ACALPCAADPLLGAFARRDFRKGSPQLVCSLPGPQGPPGPPGAPGPSGMMGRMGFPGK
DGQDGHDGDRGDSGEEGPPGRTGNRGKPGPKGKAGAIGRAGPRGPKGVNGTPGKHGTP
GKKGPKGKKGEPGLPGPCSCGSGHTKSAFSVAVTKSYPRERLPIKFDKILMNEGGHYN
ASSGKFVCGVPGIYYFTYDITLANKHLAIGLVHNGQYRIRTFDANTGNHDVASGSTIL
ALKQGDEVWLQIFYSEQNGLFYDPYWTDSLFTGFLIYADQDDPNEV"
BASE COUNT 340 a 373 c 344 g 197 t
ORIGIN
1 cgacgctctg cccggctgct gccgctgagg aaagccggga cgcggagccc cgccgagagc
61 ttctttgctc cggacgcccc tggacgtggc gggcagccgc gagggtaacc accatgatcc
121 cctgggtgct cctggcctgt gccctcccct gtgctgctga cccactgctt ggcgcctttg
181 ctcgcaggga cttccggaaa ggctcccctc aactggtctg cagcctgcct ggcccccagg
241 gcccacccgg ccccccagga gccccagggc cctcaggaat gatgggacga atgggctttc
301 ctggcaaaga cggccaagat ggacacgacg gcgaccgggg ggacagcgga gaggaaggtc
361 cacctggccg gacaggtaac cggggaaagc caggaccaaa gggcaaagcc ggggccattg
421 ggcgggctgg cccccgtggc cccaaggggg tcaacggtac ccccgggaag catggcacac
481 caggcaagaa ggggcccaag ggcaagaagg gggagccagg cctcccaggc ccctgcagct
541 gtggcagtgg ccataccaag tcagctttct cggtggcagt gaccaagagc tacccacggg
601 agcggctgcc catcaagttt gacaagattc tgatgaacga gggtggccac tacaatgctt
661 ccagcggcaa gttcgtctgc ggcgtgcctg ggatctacta cttcacctac gacatcacgc
721 tggccaacaa gcacctggcc atcggcctgg tgcacaacgg ccagtaccgc atccggacct
781 ttgatgccaa caccggcaac cacgatgtgg cctcaggctc caccatcctg gctctcaagc
841 agggtgacga agtttggctg cagatcttct actcagagca gaacgggctc ttctatgacc
901 cttactggac agacagcctc tttacgggct tcctaatcta tgccgaccag gatgacccca
961 acgaggtata gacatgccac ggcggtcctc caggcaggga acaagcttct ggacttgggc
1021 ttacagagca agaccccaca actgtaggct gggggtgggg ggtcgagtga gcggttctag
1081 cctcaggctc acctcctctg cctccttttt tccccttcat taaatccaaa cctttttatt
1141 catccaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1201 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
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