LOCUS BC054036 871 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens cytidine deaminase, mRNA (cDNA clone MGC:64975 IMAGE:5403243), complete cds. ACCESSION BC054036 VERSION BC054036.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 871) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 871) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (24-JUN-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 119 Row: f Column: 10 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 11386156. FEATURES Location/Qualifiers source 1..871 /db_xref="H-InvDB:HIT000054058" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:64975 IMAGE:5403243" /tissue_type="Liver, adenocarcinoma" /clone_lib="NIH_MGC_90" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..871 /gene="CDA" /gene_synonym="CDD" /db_xref="GeneID:978" /db_xref="HGNC:HGNC:1712" /db_xref="MIM:123920" CDS 65..505 /gene="CDA" /gene_synonym="CDD" /codon_start=1 /product="cytidine deaminase" /protein_id="AAH54036.1" /db_xref="GeneID:978" /db_xref="HGNC:HGNC:1712" /db_xref="MIM:123920" /translation="MAQKRPACTLKPECVQQLLVCSQEAKQSAYCPYSHFPVGAALLT QEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGAC RQVMREFGTNWPVYMTKPDGTYIVMTVQELLPSSFGPEDLQKTQ" BASE COUNT 207 a 270 c 210 g 184 t ORIGIN 1 gccccagccc aggctggccg gagctcctgt ttccgctgct ctgctgcctg cccggggtac 61 caacatggcc cagaagcgtc ctgcctgcac cctgaagcct gagtgtgtcc agcagctgct 121 ggtttgctcc caggaggcca agcagtcagc ctactgcccc tacagtcact ttcctgtggg 181 ggctgccctg ctcacccagg aggggagaat cttcaaaggg tgcaacatag aaaatgcctg 241 ctacccgctg ggcatctgtg ctgaacggac cgctatccag aaggccgtct cagaagggta 301 caaggatttc agggcaattg ctatcgccag tgacatgcaa gatgatttta tctctccatg 361 tggggcctgc aggcaagtca tgagagagtt tggcaccaac tggcccgtgt acatgaccaa 421 gccggatggt acgtatattg tcatgacggt ccaggagctg ctgccctcct cctttgggcc 481 tgaggacctg cagaagactc agtgacagcc agagaatgcc cactgcctgt aacagccacc 541 tggagaactt cataaagatg tctcacagcc ctggggacac ctgcccagtg ggccccagcc 601 ctacagggac tgggcaaaga tgatgtttcc agattacact ccagcctgag tcagcacccc 661 tcctagcaac ctgccttggg acttagaaca ccgccgcccc cctgccccac ctttcctttc 721 cttcctgtgg gccctctttc aaagtccagc ctagtctgga ctgcttcccc atcagccttc 781 ccaaggttct atcctgttcc gagcaacttt tctaattata aacatcacag aacatcctgg 841 atcaaaaaaa aaaaaaaaaa aaaaaaaaaa a //