LOCUS BC053907 4729 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens lin-7 homolog C (C. elegans), mRNA (cDNA clone
MGC:61447 IMAGE:6502685), complete cds.
ACCESSION BC053907
VERSION BC053907.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4729)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4729)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: p Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254922.
FEATURES Location/Qualifiers
source 1..4729
/db_xref="H-InvDB:HIT000054025"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61447 IMAGE:6502685"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4729
/gene="LIN7C"
/gene_synonym="FLJ11215"
/gene_synonym="LIN-7-C"
/gene_synonym="LIN-7C"
/gene_synonym="MALS-3"
/gene_synonym="VELI3"
/db_xref="GeneID:55327"
/db_xref="HGNC:HGNC:17789"
CDS 5..598
/gene="LIN7C"
/gene_synonym="FLJ11215"
/gene_synonym="LIN-7-C"
/gene_synonym="LIN-7C"
/gene_synonym="MALS-3"
/gene_synonym="VELI3"
/codon_start=1
/product="lin-7 homolog C (C. elegans)"
/protein_id="AAH53907.1"
/db_xref="GeneID:55327"
/db_xref="HGNC:HGNC:17789"
/translation="MAALGEPVRLERDICRAIELLEKLQRSGEVPPQKLQALQRVLQS
EFCNAVREVYEHVYETVDISSSPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEG
LGFNIMGGKEQNSPIYISRIIPGGIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELL
KAAQGKVKLVVRYTPKVLEEMESRFEKMRSAKRRQQT"
BASE COUNT 1504 a 719 c 843 g 1663 t
ORIGIN
1 gaagatggcg gcgctagggg aacccgtgcg gctggagaga gatatttgta gagcaattga
61 attattggaa aaactacaaa ggagtggaga agtaccacca cagaaacttc aggctttgca
121 aagagtcctt caaagtgaat tctgcaatgc tgtgagagag gtatatgaac atgtctatga
181 gactgtggac atcagtagca gtcctgaagt gagagcgaac gctactgcaa aggctactgt
241 tgctgcattt gctgccagtg aaggacattc tcatcctcga gttgttgagc taccaaaaac
301 agaagagggc cttggattca atattatggg aggcaaagaa caaaactctc caatctatat
361 atcccgaata attccaggtg gaattgctga tagacatggg ggcctcaaac gtggagatca
421 actcctctct gttaatggag tgagtgttga aggagaacat catgaaaaag ctgtagaact
481 gctgaaagcc gcacaaggaa aggttaaatt agtggtacga tacacaccca aagtcttaga
541 agaaatggag tcgcgctttg aaaaaatgag atcagcaaaa cgcaggcaac agacctaata
601 catttcaaaa cttgatattt cattttgcgt tttagctaga gaagttttcc ttgtgactta
661 ctaatggctg caatgccaat gattgtaaga aaacaaacaa atttatcatg aaattctcct
721 tgtcatttta taaatgccta ttttaacatc atttatggtt ccagagatgc atacactttt
781 ttctgacaag aaaaagtaaa aggtgatgag ggcaattctg tcctactgtt tttacaggcc
841 tttttcaaat gcagattttg tcataaagtt gttatagatt ttttaaaatg cttttttaat
901 attaaaatgt acttttacat tcttaatctt tttttagaaa ggaaaagttt tcttcattta
961 gctgctgatt taaaagtaaa gttctccaat tctttttttt tgcttactct atttttttta
1021 acctgtgaaa tttctttaca gttttccaag aaattaagca taacagtctc atctacggca
1081 gttcattaca ctgtcaatgt taacatcatt gctgcatttt gtactttgaa cacacacata
1141 atatatataa ccagtggtaa atcatgactc agtacagtgc aagttttttc acttttactt
1201 aaacataata tataatggat attcatttat actgatttat gaaagtaagt ttttaaacac
1261 tgaaacaatc attgctaaaa tacatattct taatatttga gcattgaggc aagaggatgt
1321 aattgatagc attacttatt acatccctat ttatgttcaa ccgtacatca aattataaat
1381 gcaaaacagg ttcagatttc atcttttgtg atttctttta aatactattc atttttattt
1441 aaatgcacag tatttcccct atattttagt ccttccattc ctagagacaa accagttatt
1501 tggtggtggg aagtagctga agcaaagaag gaaaagtaat acctttaacc tcactagctt
1561 caagagtaga cattcttact agctcaattt aaataattga ttttaaatag gaagaaaaga
1621 ggatatattt aagatacata gaaattatga tgtgaagtat tcatgagaat ctgtagattc
1681 catcaaaata agtaggaact catactaaaa ttgttggatt taaagaggca acttttgttt
1741 atgattcaaa tatgggaatt tgagaaatat ttcatttgtc cactggatgt cactatttta
1801 ctaaaaggca gctattagtg tgggactgtg actgaggtct taaagactga aagagttggg
1861 gttcattttc tgttacaact tacaggaaca tttgtacttt aagaaaaatt taagtgacaa
1921 atgttagaag atgatggatt gaaaaatata agtaatttgg catattgacc ctatataaaa
1981 aagtgggcat tttgtaacat tccttcagga agaatagaat tgtatgcttt tttctgcatg
2041 tttgtgatca ctgtgagtct cagatgatta ttccagtttt caatgatttt tcaaaataaa
2101 agtcaatcag cattgttatt tatcattaag gtattgaaca ctggattgca tggttgaatg
2161 tgtctttaat ccactacaaa atgtgcttgt tattgatagg atcatgttgt taaattgtaa
2221 attttcaaaa ttaattgatg ttttaaaaat gttgagacca aagtagtata gaagtatgga
2281 cttaatttaa ttgtaaaatt attagaggta tttgttgtag agctttatat attaaagaga
2341 ggtattggtg catataaaaa cagtaatatt attgttatgc ttgtattctt gcatttcagg
2401 gtaagtaaac cctgaagaaa tcttatttta gtatagctac agctgcagta gcttttaagt
2461 atgtatcaac atttcattat aaattatagc ttcctggttc tgtgtctcag ctgtttcaga
2521 actttcagcc aagttaaatc ttttttggtg ttgaaacttt tagtaagttg agtaagctat
2581 ttttttccct acggtaatcc acaatctgtt ctttgtgtgg gttgacacct atttataatt
2641 cttaaaataa gggtagctca aaggagccaa gtacagtagt ttagcttgct actgttgagc
2701 atgaatagca gtaggttgtt ttcattaatg cagttttcat aatgtatccc agaattttaa
2761 atcttgacca tagaaaaata cagtcattca ttggcaaaga tgtacagtgg tggtttagtg
2821 cagtgaggaa atgatgggaa tttttatctt agaaatggat gattcgtgaa taaaactagg
2881 tacatagtaa gtgtatgata gatgtttgat ttgtaaatta caaatataaa ttatcacccc
2941 catttccatt tattttcttg atatatcaaa atgtgttgac ttagtgattc tcaatcttag
3001 ctacatatta gcctggcaga gctttaaaaa attgatacct gggtcctatt ccataacaac
3061 taaatcaaaa tcaccctttt tttttttgta aagctttcca ggtggttcta aaggacacct
3121 ggggtcaata acccattata aaatgatctg attacactgg acactcttag gaagtatcaa
3181 aatagaacag ttcaatttgc agctacttaa tgattaatta catttcttag gttttttttt
3241 gttttttttt tggtttgttt gttttttgtt ttaaaagaga caggatcttg ctttgtctcc
3301 caggctggaa cacagtggtg tgatcatagc tcactgcagc ctgaaactcc ttggcttcca
3361 cctcagcctc ccaaagcatt aggattatag gcgtgagcca ctgcacctgg ccaagtaatt
3421 tcttttagga ataaaaggta cttggcattc cttatttggg aagtaattac agtcttatct
3481 ttttttttct tttttctttt ttttaataaa atctaccagt aatttaaatg tgagcttttt
3541 atgtctgtca tcattctgcc ccctttgcct ttaaaactta caaaaatacg tgtttgttat
3601 ttgagaaagc atgtttaaaa attgcagatg agaaatattg tcgttaataa ttatgtactg
3661 tcttaatgtg ggcacttcat ttgttagtat aatactagat aatagcagcc tagttcttta
3721 ggatttgacg attcaaattt tttttttgtt ttttgttttt gttttttttt gagacagagt
3781 cttgctctgt tgcccaggct ggcgtgcagt ggtgtgatct cggctcactt cagcctccgc
3841 cacctcaagg cagttcaagc aattctcctg cctcagcctc ccgagtagct aggactacag
3901 gcgtgtgcca cctctcccgg ctaatttttt ggtattttta gtagagacgg ggtttcaccg
3961 tgttagccag gatgatctcg atctcctgac ctcgtgattc acccccctcg gcctcccaaa
4021 gtgctggaat tactggcgtg agccaccatg cccagcctca aatatgtttt taaaaaatat
4081 cattgtcctc ctcctcttaa gattttttta agttattttg ctcaagtact taagtagtct
4141 ggctcaagta ctttgtttac aattaaaatg gatattatag catttaatag aagaaatggt
4201 tatggcttat ccaaaaagaa tgtcagcatg acctggtgta gacttaaaaa actacatgtt
4261 tgtgaatatt ttataatgtg gaatgatcat tgaaatatca aggattctag taattgtatt
4321 tcctgaataa atgtatgttt atgaattttc taacttacat tttgttgtgt cctctgccaa
4381 caatctggtt ttataattgt tgtctaaagt ttgctagtag tgtttcttca aaggttattc
4441 caggtatggt taagtagtga gaaaaatcac ttattaattt tcaagaactt tgagactaat
4501 ttgtattgac tcggtttttt aaaataactg gcaaatgcta tgcttctact tttaaaattt
4561 gtggtaatac ccagaatgga tgtaaaataa catttttcaa tagattactt catttatcaa
4621 tttaattctg attttaaggc ttatttaaaa taaatttgta tgagttaaaa aaaaaaaaaa
4681 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//