LOCUS BC053863 2939 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens YTH domain containing 1, mRNA (cDNA clone MGC:61557
IMAGE:4933750), complete cds.
ACCESSION BC053863
VERSION BC053863.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2939)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2939)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 115 Row: b Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21166354.
FEATURES Location/Qualifiers
source 1..2939
/db_xref="H-InvDB:HIT000053999_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:61557 IMAGE:4933750"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2939
/gene="YTHDC1"
/gene_synonym="KIAA1966"
/gene_synonym="YT521"
/gene_synonym="YT521-B"
/db_xref="GeneID:91746"
/db_xref="HGNC:HGNC:30626"
CDS 19..2148
/gene="YTHDC1"
/gene_synonym="KIAA1966"
/gene_synonym="YT521"
/gene_synonym="YT521-B"
/codon_start=1
/product="YTH domain containing 1"
/protein_id="AAH53863.1"
/db_xref="GeneID:91746"
/db_xref="HGNC:HGNC:30626"
/translation="MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKG
SKRKSDRMESTDTKRQKPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQR
SERNKRLDADRKIRLSSSASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVD
RRASRSSQSSKEEVNSEEYGSDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEED
AEEDEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSE
SVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYADQTSKLKYVL
QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQ
GFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEH
KPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRR
EPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDRRFSGVRRDVF
LNGSYNDYVREFHNMGPPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPV
PHEARYRDKRVHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERD
RGRDRERERERLCDRDRDRGERGRYRR"
BASE COUNT 968 a 511 c 709 g 751 t
ORIGIN
1 gaaagaagaa ggggagccat ggcggctgac agtcgggagg agaaagatgg agaacttaat
61 gttctggatg atattttaac tgaagtacca gaacaagatg atgaactgta taatccagag
121 agtgaacaag ataaaaatga gaaaaaggga tcaaaaagaa aaagtgatcg aatggaatct
181 actgatacca aacgacaaaa gccttctgtc cattcaagac aactggtttc taagccactg
241 agctcatctg ttagcaataa caaaagaata gttagtacaa aaggaaagtc agccacagag
301 tataaaaatg aggaatatca aagatctgaa agaaacaagc gtctagatgc tgatcggaaa
361 attcgtctat caagtagtgc ctccagagaa ccttataaga atcaacctga aaaaacctgt
421 gtccggaaaa gggatcctga aaggagggcc aaatctccta cgccagatgg ttctgagaga
481 attgggcttg aagtggatag acgtgcaagc agatccagcc agtcttctaa ggaagaagtg
541 aactctgaag aatatggctc tgaccatgag actggcagca gtggttcttc tgatgagcaa
601 gggaacaaca ctgagaatga ggaggaagga gtggaagaag atgtggagga agatgaagaa
661 gtagaagaag atgcagaaga agatgaagag gtggatgaag atggagagga ggaggaggaa
721 gaggaggagg aggaagagga ggaggaggag gaggaagaag aagaatatga acaggatgag
781 agagaccaga aagaggaggg aaatgattat gacactcgaa gtgaggccag tgactctggt
841 tctgaatctg tttccttcac agatgggtct gtcagatctg gttcaggcac agatggatca
901 gatgagaaaa agaaggaaag gaagagagct agaggcatat ctccaattgt ttttgataga
961 agtggaagct ctgcatcaga gtcatatgca gatcaaacca gtaaactcaa atatgtgctt
1021 caagatgcaa gatttttcct cataaagagt aacaaccatg agaatgtgtc tcttgccaaa
1081 gcgaagggtg tatggtccac gctccctgta aatgagaaga aattaaatct tgcatttaga
1141 tctgcaagga gtgttatctt aatattttct gtcagagaga gtggaaaatt tcaagggttt
1201 gcaagacttt cttcagaatc acatcacgga ggatctccta tacactgggt gcttccagca
1261 ggaatgagtg ctaaaatgct gggaggtgtc tttaaaattg actggatttg caggcgtgaa
1321 ttacccttca ctaagtcggc tcatctcacc aatccttgga atgaacataa accagtaaag
1381 atcggacgtg atggacagga aattgaactt gaatgtggaa cccagctttg tcttctgttt
1441 ccccccgatg aaagtattga cttgtatcag gtcattcata aaatgcgtca caagagaaga
1501 atgcattctc agccccgatc acgaggacgt ccatcccgtc gagaaccagt ccgggatgtg
1561 ggaaggcgtc gaccagaaga ttatgatatt cataacagca gaaagaaacc aaggattgac
1621 tatccccctg agtttcacca gagaccaggg tatttaaagg atccacgata ccaggaagtg
1681 gacagacgat tttcaggagt tcgccgagat gtgtttttaa atgggtccta caatgattat
1741 gtgagggaat ttcataacat gggaccacca ccaccttggc aaggaatgcc cccttaccca
1801 ggaatggaac aacctccaca ccatccttac tatcagcacc atgctccacc tcctcaagct
1861 catccccctt actcaggaca tcatccagta ccacatgaag caagatacag agataaacga
1921 gtacatgatt atgatatgag ggtggatgat ttccttcgtc gcacacaagc tgttgtcagt
1981 ggccggagaa gtagaccccg tgaaagagac cgggaacgag agcgagaccg ccctagagat
2041 aacagacgag acagagagcg agatagagga cgtgatagag aaagagaaag agagcgatta
2101 tgtgatcgag acagagaccg aggggagaga ggtcgatata gaagataatg ggcttttgga
2161 agcactgatt gtttaaagat acaaaaaatc ttgtattttt tttttgtgtg tgtttacaag
2221 tagtaaattt attttcagct gtctgcctat gaagttcatt gtgtagaagg atttattatg
2281 accccctttg ttccaagcat gcagtatcat aagaactgga aaaactcaaa tccgccaaaa
2341 atccacagct gacagttgaa ttgacacttt tattggggca gaatggaaca gtccaagaat
2401 gtagatactg attctttctc cataaatgtt cttatagtgt gttcatccta gagttatttt
2461 tttgtttgtt tttttccttt ttggatcttg attgataact gccatgatat tttgctttga
2521 tgtgtttcta catgtagttg cacacggttc agtaaaaata atgctgctat cgagtatgca
2581 aatattgaag tatgatggtt tgactgtatg gcagtgttgt agcagcctct tgtttttttc
2641 cccattgcct ctttttttaa aaaacttata aagtcacttt ttatttttcc tcagtcttca
2701 atgacgagag caatattaag aagacattgc tatctaattt ttaatctttt taaatgaaaa
2761 attcctatgt tcagtagcgt ggttgatgct attgtttagc cttcccctcc aaattgtata
2821 cattggcttg gaatgttcac aacttgcgtg cgtggcagcg gaagacgatt cccatattct
2881 acattgctac tgttttgtat aaaataaatt ggtaaagatt gaaaaaaaaa aaaaaaaaa
//